Panicum virgatum (switchgrass): 120702457
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Entry
120702457 CDS
T07260
Name
(RefSeq) LIMR family protein Os06g0128200
KO
K14617
LMBR1 domain-containing protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04977
Vitamin digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09150 Organismal Systems
09154 Digestive system
04977 Vitamin digestion and absorption
120702457
04980 Cobalamin transport and metabolism
120702457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120702457
Membrane trafficking [BR:
pvir04131
]
Endosome - Lysosome transport
Others
Lysosomal membrane proteins
120702457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LMBR1
DUF7801
DUF2981
Motif
Other DBs
NCBI-GeneID:
120702457
NCBI-ProteinID:
XP_039842197
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Position
4K:complement(1901606..1906737)
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AA seq
510 aa
AA seq
DB search
MGDFNLALVIVAVVVSVLVLLVSVYLLVNYQHPDDANQAYFPKLVVVLGLTVAVLSILML
PADVANRQACRKAVYNGACSLTLPMKTLWLVVYIVDAVLVFLVIPFAMFYYEGDQDKSVG
KRLRTALIWVVASAVVCGLVLGILYGLVGKVDFTVRHLSSSVETFPNSFSGFSSGQPCIS
SLPRQCAASTAPSSSLTTWTMRATFPEYVVALTTIVGSVLFTIFGGVGIACLPLGLIFSF
VRRPKAVITRSQYIKEATELGKKARELKKAAEALHQEERSGNKGRKWRKNVKAVEKELLL
LEDDMKALEEMYPQGEKAETTWALTVLGYIGKLIFGVVGLIISIAWVAHIVIYLLIDPPL
SSFLNEVFIKLDDVWGLLGTAAFAFFCFYLLIAVIAGEMMLGLKLVFITIHPMKWGGTLM
NSFLFNVGLILLCSISVIQFCATAFAYYAQATAAQEIFGHTLQSLRGIKYLYKYNIFQYG
FVALAILTLFYYAIFGWRKRKPTGRFQISN
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgggggacttcaacctggcgctggtgatcgtggcggtggtggtcagcgtgctcgtgctg
ctcgtcagcgtctacctgctcgtcaactaccagcaccccgacgacgccaaccaggcctac
ttccccaagctcgtcgtcgtgctcggcctcaccgtcgccgtcctctccatcctcatgctc
cccgccgacgtcgccaaccgccaggcctgccggaaggccgtctacaacggcgcctgcagc
ctcacgctccccatgaagacgctctggctcgtcgtctacatcgtcgacgccgtcctcgtc
ttcctcgtcatacccttcgcgatgttctactacgagggcgaccaggacaagtctgtgggg
aagaggctcaggaccgcgctcatatgggtcgttgcgtccgcggtggtttgtggccttgta
cttggcatcctatacggacttgttggtaaagtggacttcaccgtcaggcacctatcttca
tcagtcgagacgtttccaaactcattttctggattctcaagcggtcagccttgcatcagt
tcattgcctcgtcagtgtgcggcttctacggcaccttcaagctctttaacaacttggaca
atgcgtgctaccttccctgaatatgtcgttgctcttactactatcgttggatctgtgctt
ttcaccatatttggtggtgttggcattgcttgccttccattaggacttatattctcattt
gtccggcgtccaaaagctgtcattacacgctcacaatatataaaggaagcaactgaattg
ggaaagaaggccagagaattgaagaaagcagctgaagcccttcaccaagaagagagaagc
gggaacaagggcaggaaatggcgcaaaaatgtgaaggctgtggaaaaggagttattactt
ctggaagatgacatgaaggctctggaggagatgtatcctcaaggagaaaaggctgagact
acttgggcattgacagtccttgggtacattggaaaacttatatttggtgttgtcgggtta
atcatatcgatagcttgggttgcacatatcgtcatatacttgctgattgatcctcctcta
tcgtcattcctaaatgaagtcttcataaagttggacgatgtttggggtctgcttgggact
gctgccttcgcgttcttctgcttctatctccttattgcagtgattgctggggagatgatg
cttggcttgaaactagttttcatcaccattcatccgatgaaatggggaggcactttaatg
aactccttcctgtttaatgttggactcattctactttgctccatcagtgtgattcagttc
tgtgccacagcttttgcctactatgcacaagcaactgctgctcaggagatcttcggccac
acattgcaatctcttcgtggaattaagtacctttacaagtacaacattttccagtatggc
tttgttgctcttgccatactcacgctcttttactatgcgatatttggatggcgaaagagg
aaaccaacaggaaggttccagatctcaaattga
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