Panicum virgatum (switchgrass): 120702566
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Entry
120702566 CDS
T07260
Name
(RefSeq) probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic isoform X1
KO
K01662
1-deoxy-D-xylulose-5-phosphate synthase [EC:
2.2.1.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00730
Thiamine metabolism
pvir00900
Terpenoid backbone biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00096
C5 isoprenoid biosynthesis, non-mevalonate pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
120702566
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
120702566
Enzymes [BR:
pvir01000
]
2. Transferases
2.2 Transferring aldehyde or ketonic groups
2.2.1 Transketolases and transaldolases
2.2.1.7 1-deoxy-D-xylulose-5-phosphate synthase
120702566
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Motif
Pfam:
DXP_synthase_N
Transket_pyr
Transketolase_C
Motif
Other DBs
NCBI-GeneID:
120702566
NCBI-ProteinID:
XP_039842359
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Position
4K:complement(3331706..3336803)
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AA seq
721 aa
AA seq
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MDTAFLRSPLARNLVYDEFAVLHSPSYRFHPLRYSRCNPTNSTPCQTLSASPSRGLTQRV
AALPNVDDFFWEKDPTPILDTIDAPIHLKNLSSKELKQLADEVRSEISFIMSSKCQPCGP
GRSVVELTIAIHYVFNAPMDKILWDAGQHAYAHKILTGRRSLFHTIKQKNGLSGFTSRYE
SEYDPFGAGHGCNSLSAGLGMAVARDINGRKNRIVTVISNWTTMAGQVYEAMGHAGFLDS
NMVVILNDSCHSLLPKADGRPKMSVSAFSSAVSKIQSSKGFRRFREAAKGLAKWFGKGMH
EFAAKIDEYARGMIGPHGATLFEELGLYYIGPIDGHNIDDLICVLKEVSTLDSTGPVLVH
VITGTENDTGGNMRSEITPNDEGPPNSSHDLLKFLETGLSRTYNDCFVEALTAEAENDKR
IVVVHGGMGMDRSLRLFKSSFPDRFFDLGIAEQHAVTFSAGLACGGLKPFCIIPSTFLQR
AYDQIVEDVDMQKIPVRFAITNAGLVGSEGPTNSGPFDITFMSCLPNMIVMSPSNEDELI
DMVATAAMVEDRPICFRYPRGAVVGTSGTFTYGNPLQIGKGEILVEGKEIAFLGYGEVVQ
RCLIAQSLLSNFGIQATVANARFCKPLDIDLIRTLCQQHSFLITVEEGTVGGFGSHVSQF
ISLDGLLDGRIKWRPIVLPDRYIEHASLAEQFDLAGLTAHHIAATALTLLGRHRDALLLM
K
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacactgcgtttcttcgttctccgcttgctcgcaatctagtttatgacgagtttgcc
gttcttcactccccaagctaccgtttccatcctctgcgctattcgaggtgcaatccgaca
aactcgacgccctgccaaacgttgtctgcttcgccatcaaggggcttgactcagcgagtg
gccgcattacctaatgttgatgattttttctgggagaaggatcctactccgatcctggac
acaattgatgcgcccattcatttgaaaaatctatctagtaaggagctcaagcagttagct
gatgaagttcgttctgaaatatctttcataatgtccagcaaatgccagccatgtggtcct
ggtcgctcagttgtggagctgacaattgctatacattatgtgtttaatgccccaatggat
aagatactgtgggatgctggtcagcatgcgtatgcacacaagattctcacaggaaggcgc
tctctcttccatactattaaacaaaaaaacggcctttctggtttcacatctcgatatgag
agcgagtatgatccctttggtgctggacatggatgcaatagtctttctgctggccttggg
atggcggttgcaagggatataaatgggagaaaaaatcgaatagtgacagttataagtaat
tggacaaccatggctggccaggtgtatgaggcaatgggtcatgctggtttcctcgattcc
aacatggtagttattctaaatgatagctgtcactccttgcttcctaaagctgatggccgg
ccaaagatgtcagtcagtgccttttctagtgctgtcagcaagattcaatccagcaaagga
tttaggaggtttagggaggctgcaaagggactcgctaaatggtttggcaaaggaatgcat
gagtttgctgccaaaattgacgagtatgctcgtggtatgataggtcctcatggagcaact
ctttttgaagaacttggattatattatattggtcctattgatgggcataacattgatgat
ctcatctgtgtattaaaggaggtctcaactctagattcaactggcccagtactggtacat
gtaattactgggactgaaaatgacactggtggaaatatgaggagtgaaataactccaaat
gacgaagggcctccaaactcaagtcatgatcttcttaaatttttagaaactggactttct
aggacatataatgactgctttgtagaagcattaacagcagaagctgagaatgacaagcgc
attgtggtagttcatggtggcatgggaatggatcgatcactccgcttattcaagtccagc
ttcccagacagattttttgacctgggcatcgctgagcaacacgctgttaccttttctgct
ggtttggcctgtggaggtttaaagcctttctgcataattccatccacatttcttcagcga
gcatatgatcagatagttgaagatgtggacatgcaaaagataccagttcgatttgctatc
acaaatgctggtctagtggggtctgagggcccaactaattcaggaccgtttgatataaca
ttcatgtcctgcttgccaaacatgattgtcatgtcaccatctaacgaggatgaacttatt
gacatggtggcaacagctgcaatggttgaggacagacctatttgcttccggtatcctagg
ggtgccgttgttgggactagtggcactttcacgtatgggaatccacttcagattggtaaa
ggagagattcttgttgagggaaaagagattgcttttcttggctatggtgaggtggtccag
cgatgcttgatagctcaatctcttttatcaaactttggcattcaggcgacagttgcaaat
gcaagattttgcaagccacttgacattgatctaatcagaacgctatgtcagcagcatagt
tttcttatcacagtggaagaaggaacagttggcggctttggatcgcatgtctctcagttt
atttcactagatggtctacttgatggccgaataaagtggcgacccattgtgctaccagac
aggtatattgaacacgcttcactcgctgagcaattcgacttggctggcctaactgctcat
cacatagctgcaactgcactgaccctcctagggcgtcaccgagatgcacttctgttgatg
aagtag
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