KEGG   Panicum virgatum (switchgrass): 120702580
Entry
120702580         CDS       T07260                                 
Name
(RefSeq) coatomer subunit beta'-1-like
  KO
K17302  coatomer subunit beta'
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120702580
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pvir04147]
    120702580
Membrane trafficking [BR:pvir04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    120702580
Exosome [BR:pvir04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   120702580
SSDB
Motif
Pfam: B-prop_COPA_B_2nd TPR_COPA_B WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_WDR75_1st EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_SCAP ANAPC4_WD40 PEP5_VPS11_N Beta-prop_IFT140_1st WDR90_beta-prop_4th NBCH_WD40 Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_WDR75_2nd WD40_RFWD3 Clathrin TPR_1 Beta-prop_DCAF12 TPR_2 Beta-prop_WDR35_TULP_N TPR_GEMI5 HEAT_GCN1
Other DBs
NCBI-GeneID: 120702580
NCBI-ProteinID: XP_039842373
LinkDB
Position
4K:3608350..3618199
AA seq 902 aa
MPLRLEIKRKFAQRSERVKSVDLHPTEPWILSSLYSGSVCIWDYRAQAMVKSFEVSELPV
RSAKFVSRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPSVLSSSDD
MLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTTKIWSLGSPDPNFT
LDGHQKGVNCVDYFTGGDRPYLITGSDDSTAKVWDYQTKSCVQTLEGHTHNISAVCFHPE
LPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAVGYMKGSRRMVIGYDEGTIMIKMG
REVPVASMDTSGKIIWAKHNEIQTVNIKTVGAGFEVTDGERLPLAVKELGSCDLYPQSLK
HNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSEGEYAIRESTSRIKIFNKSFQ
EKKSIRPTFSAERIFGGVLLAMCSSDFICFYDWVDCRLIRRIDVTVKNLYWADSGDLVAI
ASDTSFYILKYNRDVVASYLEGGKPVDEEGVEDAFELLHEVNERVRTGIWVGDCFIYNNS
SWRLNYCVGGEVTTMYHLDRPMYLLGYLANQSRVYLIDKEFNVIGYTLLLSLIEYKTLVM
RGDLERANEILPSIPKAQYNSVAHFLESRGMLEEALEIATDADYKFDLAVQLGKLDVAKA
IAIEAQSESKWKQLGELAMSTGKLEMAEECLHQAKDLSGLLLLYSSLGDAEGIKKLASLS
KGHGKNNVAFLCLFMLGKLEDCIQLLIDSNRIPEAALMARSYLPSKVSEIVAIWRNDLSK
VNPKAAESLADPSEYPNLFDDWQVALTVEKSVASQRGLYPPAGDYLNHAEKSDSTLVEAF
KRMQVIEDVEPVDPDEENGEPDQEVLEENEMENMDEVVPVGADEHEEGEEQSSTNNEGAA
SA
NT seq 2709 nt   +upstreamnt  +downstreamnt
atgccgctcaggttggagatcaagcggaagttcgcgcaacggtcagagagggtcaagtcg
gtggatcttcaccccacggagccatggattctgtcgagcctctactcggggagtgtctgc
atctgggattaccgggcacaggctatggtgaaatcatttgaagtttcagaactgccagtg
cggtcggcaaaatttgtatcaagaaaacaatgggttgtagctggtgcagatgacatgttc
attcgtgtctacaactacaataccatggacaaagttaaagttttcgaggcccatactgat
tacatcagatgtgttgctgtccatccaactctaccatctgtgctgtcatcatctgacgac
atgttgataaaactgtgggactgggataaagggtggatgtgcactcaaatctttgaggga
cattcacactatgtgatgcaggttactttcaatccaaaggataccaacaccttcgcaagt
gcatctcttgaccgcactacaaagatatggagtttgggttctccagatccaaactttaca
ctagatggacatcaaaagggtgttaattgtgttgactacttcactggtggtgacaggccc
tatttgattactggttctgatgactccactgcaaaggtctgggattaccaaacaaagagc
tgtgttcagacactcgaagggcatacacataacatctctgctgtctgtttccatcctgag
cttcctataatcatcactggatcggaagatggcacagttcgtatatggcattcgacaact
tatagactcgagaacacactaaactatggccttgagagagtttgggctgttggatacatg
aagggatcaagaaggatggtgattggttatgatgagggaactattatgattaaaatgggc
cgtgaagtacctgtagcaagtatggacaccagtgggaaaatcatttgggcgaaacataat
gaaatacaaactgtaaatattaagactgttggtgcaggctttgaggtcacagatggagaa
agattacccctggctgtaaaagagttaggaagctgcgatctatacccacagagtttgaag
cataaccctaatggccgattcgtcgttgtatgtggagatggtgaatacataatttatact
gcattggcttggaggaatagatcgtttggatctgcattggaatttgtttggtcatcagaa
ggagaatatgcaatcagggaaagtacatcaagaatcaaaattttcaataaatcatttcag
gagaagaaaagtatccggcctacattttcagcggagcgtatttttggtggggtattgttg
gcaatgtgttctagtgacttcatttgcttttatgactgggttgattgcagactaatacgc
cgaattgatgtcactgttaagaacctttactgggctgatagcggtgatctagttgcaata
gcaagtgatacgtcattctacatcctcaagtacaatagagatgttgttgcttcttatcta
gaaggtggaaagcctgtcgacgaggaaggtgttgaagatgcttttgagctgcttcatgag
gtcaatgagcgagtgcgtactgggatttgggttggagactgcttcatatataacaattca
tcttggcgcctaaattattgtgttggtggtgaggtcaccacaatgtatcacttggatcgc
cctatgtatttgttgggatatcttgcgaaccaaagtcgagtttatctaatcgacaaggag
tttaacgtcattgggtacacattacttctcagtttgattgagtacaaaacccttgtgatg
cgtggggatttggaacgcgcaaacgaaattttaccatccataccaaaggcacaatataat
agtgtcgctcatttcttggagtctagaggtatgttggaagaggctcttgagatagccact
gatgctgactataaattcgatctagctgtgcagcttggaaaattagatgttgcaaaggct
atcgccatagaagcacaaagtgaatctaaatggaagcagttgggagaactcgccatgtct
acaggcaagctagagatggcggaagaatgccttcaccaagcgaaggatttaagtggctta
ttgttattatactcgtcccttggagatgctgaaggaatcaaaaagcttgcttctttatca
aaaggacatgggaaaaacaacgttgctttcctctgcctttttatgcttggtaaattggaa
gattgcatacagttgctcatagacagcaatcgtatacctgaagctgcattaatggcgcgt
tcatatcttcctagcaaagtctcagagatagtagcaatttggagaaatgacctcagtaaa
gttaatccaaaagctgcagagtctcttgcagatccttctgaatatccaaatttgtttgat
gattggcaggttgcactaactgtagaaaaaagtgttgcttctcagaggggcctctaccct
cctgctggcgattacttgaaccatgctgagaagtcagattctactcttgtggaggctttc
aaaaggatgcaggtcattgaggacgtggaacctgtagacccagatgaggaaaatggagag
cctgatcaagaggtgttggaagagaatgaaatggagaacatggatgaagttgtcccagtt
ggtgccgatgaacatgaagagggtgaggaacagtcgagtacgaacaatgaaggagctgcg
tcagcctga

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