Panicum virgatum (switchgrass): 120702643
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Entry
120702643 CDS
T07260
Name
(RefSeq) DNA repair protein RadA-like isoform X1
KO
K04485
DNA repair protein RadA/Sms
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120702643
DNA repair and recombination proteins [BR:
pvir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
120702643
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
AAA_25
ChlI
ATPase
DnaB_C
Lon_C
AAA
AAA_22
AAA_16
Zn_ribbon_LapB
RNA_helicase
nSTAND3
SLFN-g3_helicase
NACHT
GPHH
AAA_19
AAA_14
Isochorismatase
Motif
Other DBs
NCBI-GeneID:
120702643
NCBI-ProteinID:
XP_039842445
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Position
4K:4267954..4277953
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AA seq
655 aa
AA seq
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MLRSPSSLRSLLHLSARLLPPPNPRLPRPPHPRLPSYPLSARPRFLSSSSSSSSSPPTTG
GAGWATYDPVTDSLSAPAALSSPSASASDPEAPAESDAWAVFDPAAGRIIKHRSPPSSST
TAAAAKAEEDEEEEEEEGEGADEGEEKGRVRASARVAKAQTSWSSVAAVRKPAGKGGKER
FSFVCSHCKEADSQWWGFCRHCNAAGTMEKYVPGTDGNASAVGLHHISRSWIPQKSKEIV
PQSLQEVNKGLNQAEWRIPLSGSFGVEIARVLGGGIVPGSLILVGGDPGVGKSSLMLQLA
SNILEGFKVEESSPVVYVSGEESIEQIGNRADRMSITSSKLYLYSGTDIEDILDKIQPLS
PRALIIDSIQTVYVKSFAGSAGNLAQVKECTSALLRFAKLTNIPVFLIGHVTKSGDIAGP
RLLEHIVDVVLYMEGERCSSHRLLRSVKNRFGSTDELGVFEMAEFGLQAVLNPSQMFLTE
HDSDSEILAGLAVAVILDGSRTFAIEVQALCVSGSQRSGQVVGIPTRRADVIISVLMKQA
GLKLQDNAIFLNVVSGFELTETAGDLAIAASICSSFLEFPIPNDVAFIGEIGLGGELRTV
PRMDKRVMAIAKLGYKKCVVPRTSEKLLKPLNLDIEILPCSNLKQFINAIFRPQG
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgctccgctcgccctcctcgctccgctccctcctccacctctccgctcgcctcctcccc
ccgccgaaccctcgcctcccacgcccccctcacccccgcctccccagctacccgctctcc
gcccgccctcgcttcctctcgtcgtcgtcctcctcatcctcctccccgcccaccaccggc
ggcgccggatgggccacctacgacccggtcaccgacagtctcagcgctcccgcggcgctc
tcctcaccctccgcctccgcctccgaccccgaggcccccgcggagtccgacgcctgggct
gtcttcgaccccgccgcgggccgcatcatcaagcaccgctcccctccttcgtcgtctacc
accgcggcggcggcgaaggcggaggaggatgaggaggaggaggaggaggagggggaaggc
gcggacgagggcgaggagaaggggagggtacgggcgagcgcgcgggtcgcgaaggcccag
acctcgtggtcgtcagtggcggcggtgcggaagcccgcgggtaagggcggcaaggagagg
ttctcgttcgtgtgcagccactgcaaggaggccgattcgcagtggtggggcttttgccgc
cactgcaacgcggcggggaccatggagaagtacgtcccggggactgatggcaatgcctct
gcggtggggttgcaccatatctcccggtcgtggattcctcagaagagcaaggagattgtg
ccgcagagccttcaggaggtgaacaaggggctcaatcaggctgagtggcgcatacccctg
tcagggagctttggagtggagattgctcgagtgcttggtggtggcattgttcctggctcc
ttgatattagtcggcggggatccaggtgttggcaaaagttcattgatgttacagcttgct
tcaaatatattggagggtttcaaggttgaggagtcttcacctgttgtatatgtttctggt
gaggagagtattgagcaaattggaaacagggctgatcggatgagtatcacgtctagcaag
ttgtacctctactctggtacggacattgaggatatcttggacaaaatccaaccgctgtct
ccaagggctcttattatcgattcaattcaaacagtttatgtcaaatcgttcgctggaagt
gctggcaatttagcacaggtcaaggaatgcacctctgccttgttacgatttgcaaaactg
actaatatccctgttttcttgattggacatgttacaaaaagtggtgatattgctggtcct
cgcctcttagagcacatagtggatgttgttttgtacatggagggggagaggtgctcatcc
catcgactgttgcggtcggttaagaatcgtttcggttcaacagatgagcttggtgtattt
gagatggctgaatttggtctgcaagctgttttgaatcctagccagatgttcttaactgag
catgactctgattctgaaattctagctgggcttgctgtagctgttattttagatggatct
aggacctttgctatcgaagttcaggcattgtgtgtttctggttctcagcgttctggacaa
gtagttggcataccaacaagaagggctgatgtcataatatctgttcttatgaagcaagca
ggcctaaaacttcaggataatgctatttttttgaatgtcgtcagtggcttcgagttgact
gagaccgcaggagatctggcgatagcagcttcaatttgcagcagtttcttggagtttccc
atcccaaatgatgttgcatttattggagagattggtcttggcggtgaacttcgaactgtg
ccaagaatggacaagcgggtgatggctattgcaaagctgggatacaagaaatgtgtagtt
cccaggacctccgagaagttgctcaaaccgcttaatctggatatcgagatcttgccctgc
agcaacttgaagcagtttataaacgccatatttaggccccaaggctga
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