Panicum virgatum (switchgrass): 120702677
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Entry
120702677 CDS
T07260
Name
(RefSeq) long chain acyl-CoA synthetase 4-like
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00061
Fatty acid biosynthesis
pvir00071
Fatty acid degradation
pvir01100
Metabolic pathways
pvir01212
Fatty acid metabolism
pvir04146
Peroxisome
Module
pvir_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
120702677
00071 Fatty acid degradation
120702677
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
120702677
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pvir01004
]
120702677
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120702677
Enzymes [BR:
pvir01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
120702677
Lipid biosynthesis proteins [BR:
pvir01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
120702677
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of breast milk
120702677
Exosomal proteins of breast cancer cells
120702677
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-GeneID:
120702677
NCBI-ProteinID:
XP_039842502
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Position
4K:4634380..4643930
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AA seq
649 aa
AA seq
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MKHLVEVEPATETAGPAYRNARAKDGLLQPPPGLHSCWDIFRTAVEKYPNNPMLGRRSVV
DGKAGEYTWVTYKEVYDVVMKLAASISKSGINQGECCGIYGANCPEWIISMEACNALGVC
CVPLYDSLGAGAVEFIICHAEIQVVFVEEKKIAELLKTCHATSKYLKTIISFGGVTNDHK
EEAKNHGLSIFSWEEFLITGGSHQVDLPEKKRSDICTIMYTSGTTGDPKGVMLSNESLLV
NVVGPDSVLQYIGEVFDQDDVYLSYLPLAHVFDRMFEEVFIYHGSKIGFWRGDVKLLVDD
IAALKPTVFCAVPRVLDRIYSGLTAKISTGGILKKTLFNIAYKMKLDSMRKGVKHEKAAP
FFDKLVFNKVKERLGGRLRVILSGGAPLAVPVEEFLRVVTCAYVVQGYGLTETCAGSIVS
IPNEFSMVGTVGPPVQHVDVRLESVPEMGYDALSSIPRGEICIRGSVLFSGYYKRDDLAQ
EVMIDGWFHTGDVGEWQPDGSLKVIDRKKNIFKLSQGEYVAVENLENVYSVLQEIDSIWV
YGNSFESYLVAVVNPNQQVLEHWAEQNGITGSFAELCKNSRAKEHILSELTKIAKEKKLK
GFEFIKTIHLDPLPFDIERNLITPTYKKKRPQMLKYYQEEIDALYKGLK
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgaagcacctggtggaggtggagccggcgacggagaccgccgggccggcgtaccggaac
gcgcgggccaaggacggcctcctgcagcccccgccggggctccacagctgctgggacatc
ttccggacggccgtggagaagtaccccaacaacccgatgctcggtcgccggagcgtcgtc
gacggcaaggcaggtgagtacacctgggtgacttacaaggaagtctacgatgtcgtgatg
aagcttgcagcctccatcagcaagtcaggaatcaatcagggtgaatgctgcggcatatac
ggcgccaactgcccggaatggatcatcagcatggaggcttgcaatgcgcttggggtttgc
tgcgtgccgctctacgattccctcggtgctggggcagtagagtttatcatatgccatgcc
gaaatccaggtcgtatttgtggaggagaagaagatcgcagagctcctgaaaacttgccat
gccacttcaaagtatctgaaaacaatcataagctttggaggagtcactaatgaccataaa
gaggaagctaaaaaccatggcctgtccattttctcttgggaggaattcctgatcacgggt
ggctctcatcaagttgatcttcctgaaaagaagagatctgacatctgtaccataatgtac
acaagtggcacaacaggagaccctaaaggagttatgttatcaaatgaaagccttcttgta
aatgttgtgggtcctgattctgtacttcagtatattggtgaagtttttgatcaagatgat
gtttatttgtcatatcttccactagctcatgtcttcgatagaatgtttgaggaagtgttc
atttaccatggatcgaaaattggattttggcgtggggatgtcaaactattggttgatgac
attgcagcactaaaaccaacagtattctgtgctgttccacgtgtacttgacaggatatat
tcaggtcttacagccaagatttccactggtggtatactgaagaaaactttattcaacatt
gcttacaagatgaaactggacagcatgaggaaaggagttaaacatgagaaagcggctcca
ttctttgataaattagttttcaacaaggtgaaagaaaggcttggtggaagattaagagtt
attttgtctggtggcgcccctctagctgtacctgtggaagaatttttgagggttgtgaca
tgtgcttatgttgttcagggctatggactgacggaaacttgtgcgggctctatagtttca
ataccaaatgaattctccatggttgggactgttggtccaccagtccaacatgtagatgta
cgcctcgagtcagttccggagatgggttatgatgctttgtctagcattcctcgtggagag
atatgcataaggggaagtgtgctattttctggatattacaaaagagatgaccttgcacag
gaagtcatgattgacggatggtttcacacaggagatgttggtgagtggcaaccagatggg
tccttgaaagtcattgatagaaagaagaatatattcaagctttctcagggagaatatgtt
gcagtggaaaatctagagaatgtttatagtgttcttcaagagatagattcgatatgggta
tacgggaatagttttgaatcttatcttgttgccgtggtcaatccgaaccaacaagttctt
gagcattgggctgaacaaaacggtattactggaagttttgctgaactatgcaaaaattca
agagctaaagaacatattctctcagaactaacaaagattgcaaaggaaaagaagctgaaa
ggctttgagttcataaaaactatacatctcgacccgttaccgtttgatatcgagcgcaac
ctcatcaccccaacatacaagaagaaacggccacagatgctcaagtactaccaggaggag
attgatgcactctacaagggcttgaagtaa
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