Panicum virgatum (switchgrass): 120702700
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Entry
120702700 CDS
T07260
Name
(RefSeq) cell division control protein 48 homolog C-like
KO
K14571
ribosome biogenesis ATPase
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120702700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120702700
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
120702700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
AAA_5
AAA_14
Rad17
AAA_22
AAA_16
AAA_33
TIP49
AAA_2
AAA_28
AAA_17
RNA_helicase
nSTAND3
IstB_IS21
NPHP3_N
Vps4_C
AAA_18
ABC_tran
Mg_chelatase
Viral_helicase1
NACHT
Cytidylate_kin2
NB-ARC
TsaE
Bac_DnaA
AAA_3
NTPase_1
SKI
Parvo_NS1
AAA_11
tRNA_lig_kinase
Nucleolin_bd
Mu-like_Pro
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
120702700
NCBI-ProteinID:
XP_039842535
LinkDB
All DBs
Position
4K:complement(5034932..5041191)
Genome browser
AA seq
771 aa
AA seq
DB search
MAKRPRHGGAGRSRLRPLEGKLRRCILNGGLAVAGASAEEVGDTLRFHHPEFRRQKLDPF
TALVRRVLSSIPSSSSSSGSDDDDDDGSSASRRRHDAHATTSSSTSVFDEATHPPPSPAF
DVTKSLLRSQYAARVQTPKRNPAANQQQLEIEVNAEKARRLITSDGGAGGDAKPDAAASE
GIVRREKGPRFADLGGMEAVIEELMMEVVVPLCHPELPQRLGVRPVAGLLLHGPPGCGKT
TLAHAIANETGVPFYKISAPEVVSGVSGASEENIRGLFQKAYRTAPSIVFIDEIDAIASK
RENLQREMERRIVTQLMTCMDQFHQNIGSSSSDLDAESAEKKPGYVIVIGATNRPDAVDQ
ALRRPGRFDREISLGVPDENARKQILKMLTQNLRLEGEFDLFKIARATPGFVGADLKALV
DKAGNLAMKRIIDERRAQYRRNHDGNSKHDWWRQPWDASEVEGLHITMDDFEEATKMVQP
SLRREGFSSVPDVTWDDVGGLDSLRKEFDRCIIRRIKHPEDYEVFGVNMQAGFLLFGPPG
CGKTLIAKAVAHEAGANFIHIKGPELLNKYVGESESEVRKIFTRARTNSPCILFFDEVDA
LTTKRGKEGGWVVERLLNQLLIELDGADQRQGVYVIGATNRIDVIDDAVLRPGRFGKKLY
VPLPGAEERVSILKAHARSKPISFDVDLAALAHREECNNLTGADLASLVNEAAMAALEER
LEFLENGTSSMNSSSLIELSHFERALSKVKPSVSEQQIKHYEALSKRYSSN
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcgcccgcgtcacggcggcgctggccgctccagattgcggcccttagagggg
aagctccgccgctgcatattgaacggcggcctagctgtcgccggcgcctccgccgaggaa
gtcggcgacaccctccgcttccaccaccccgagttccgccgccagaagctcgaccctttc
accgctttggtccgccgcgtcctctcctcgataccctcctcctcatcctcctccggctcc
gacgacgacgacgatgacggatcctccgcatcccgtcgtcgccacgacgcccacgctacg
acctcctcctctacctccgtcttcgacgaggccacacacccgccgccgtcccccgccttc
gacgtcaccaagtccttgctccgctcccagtacgccgcgcgcgtgcaaacgcccaagcgg
aaccccgccgctaaccagcagcagctggagattgaggtgaatgcagagaaggcgcgccgc
ctcatcacgtccgacgggggcgccggcggagatgctaagccggacgccgcggcctctgaa
ggaatagtcagaagggagaaggggccgaggttcgccgatctcggtgggatggaggcggtg
atagaggagctgatgatggaagtggtcgtgcccctgtgccatccggagctgccgcagcgc
cttggggttaggcctgtcgctgggttgctgctacatggaccgcctggttgcggaaagacc
acacttgcgcatgccattgccaatgagactggtgtgccattctacaagatctcagccccg
gaggtcgtatctggggtatctggagcttctgaggaaaacatcaggggcttgtttcagaag
gcttataggactgctccctcgattgtattcattgatgaaatagatgcaattgcatccaag
agggagaatttgcaacgagagatggagcgacggatagttactcaattaatgacatgcatg
gatcaattccaccagaatattggatccagcagcagtgatttggatgcagaatcagctgaa
aagaaacctggttatgttattgtcattggagccacaaataggcctgatgctgtggatcaa
gctctgcggcggccaggaaggtttgatcgagagatatctcttggtgttccagatgagaat
gcacggaaacagatacttaagatgcttactcagaatctccgacttgaaggcgaatttgac
ttgttcaagatagctagggccacaccaggttttgttggtgctgacctgaaggcgttagtg
gacaaagcaggcaatctagcaatgaagagaataattgatgaaagaagagctcagtaccgt
cgtaatcatgatgggaatagcaagcatgactggtggagacaaccttgggatgccagtgag
gtggagggcctacatattacaatggacgactttgaggaagcaacaaaaatggttcaacca
tccttgagaagagaagggttttcatctgtgcctgatgtcacatgggatgatgttggaggt
ctggattcattaaggaaagagtttgaccgctgcattattcgacgtatcaagcatcctgaa
gattatgaggtgtttggagtgaatatgcaagctggcttcctgttgtttggacctccaggc
tgtgggaaaacactaattgcaaaagcagtggcccatgaggcaggggctaattttattcat
atcaagggacctgaactattgaacaagtatgttggggaaagtgaatcagaagtgaggaaa
atattcactcgtgcacgcacaaattccccatgcatcctatttttcgatgaggtagatgct
ttgacaacaaagagagggaaagagggaggatgggttgttgaacgtctcctaaatcagtta
cttattgaacttgatggtgctgatcaacggcaaggtgtctatgtgataggagctacaaac
agaattgatgtgatagatgatgctgttctacggcctggtagatttgggaagaaactttat
gtacctttacctggtgcggaagagcgggtctcaatattaaaagcacatgctcgaagcaag
cccatctcatttgatgtcgatttggctgcactggcacatcgtgaggaatgcaacaatctc
actggagccgacctagcatcactggtcaatgaagcagccatggcagcattggaagagaga
ttggaattccttgagaatgggacatcgtcaatgaattcctcgtctttgatcgagctctca
cacttcgaacgtgctctatcaaaggttaagccatcagtatctgaacagcaaattaaacac
tacgaggcattgtcaaagagatactcgtcaaactga
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