Panicum virgatum (switchgrass): 120702728
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Entry
120702728 CDS
T07260
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120702728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120702728
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
120702728
Complex C
U5 SnRNP specific factors
120702728
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Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
120702728
NCBI-ProteinID:
XP_039842586
LinkDB
All DBs
Position
4K:complement(5362945..5372558)
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AA seq
2363 aa
AA seq
DB search
MWSGAPPPAPPHMAAAPPPPGSTGAGAGQPPPPPPPAGAPQGAKPLTPAELEAQLVEKAR
KWHQLNSKRYGDKRKFGFVEAQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFV
PHAVYKLLENMPMPWEQVRHVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREK
RDRRHFKRMRFPPFDDEEPPLDYADNLLDVEPLEAIQLELDSEEDAAVYEWFYDHKPLMK
TKLINGPSYRKWHLSLPIMATLYRLSGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGG
PKFEPLYRDMEKGDEDWNEFNDINKLIIRQPLRTEYRIAFPHLYNNRPRKVKLGVYHTPM
IMYIKTEDPDLPAFYYDPLINPITSTNKVDRRERKATEEDDDEDFCLPEDVEPLLKSTEL
YTDTTAAGISLLFAPKPFNMRSGRTRRAEDIPLVSEWYKEHCPPAYPVKVRVSYQKLLKC
YVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNL
NYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQ
LADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPM
WRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDV
LDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNV
AHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTT
VHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDN
PHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKR
HLFPNWVKPADSEPPPLLVYKWCQGINNLQDIWDTSDGQCVVMLQTKFEKFFEKIDLTLL
NRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLIL
GLTRASEIAGPPQMPNEFLTFADTKIETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRY
LTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENS
FVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAIAFLRV
DDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCE
NKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTH
FRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSW
DRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRT
DVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNR
RFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMD
LCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHRWQMSKPSLVSESKDLF
DQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLH
SAFGNWFPGSKPLLQQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIF
SNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKR
LGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLP
FQACLKIEKFGDLILKATEPQMVLYNIYDDWLKSISSYTAFSRIVLILRALHVNNEKAKM
LLKPDKTIVTEPHHIWPTLSDEQWLKVECALRDLILSDYAKKNNVNTSALTQSEIRDIIL
GAEIAPPSQQRQQIAEIEKQSRETTQLTAVTTRTTNVHGDELIITTTSPYEQQAFASKTD
WRVRAISATNLYLRVNHIYVNSDDIKETGYTYIMPKNILKKFICIADLRTQIAGFLYGLS
PQDNPQVKEIRCIAIPPQHGTHQMVTLPANLPEHEFLNDLEPLGWMHTQPNEAPQLSPQD
LTSHAKILESNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRSNKDNGSNPHGYL
PTHYEKVQMLLSDRFLGFYMVPDNTPWNFNFMGVKHDPLMKYNMKLGMPRDFYHEDHRPT
HFLEFSNIEEGEVAEGDREDTFS
NT seq
7092 nt
NT seq
+upstream
nt +downstream
nt
atgtggagcggcgcgccgcctccggcgccgccgcacatggcggcggccccgcctccccca
ggctcgacgggggccggggcgggccagcccccgcccccgccgccgccggccggggcgccg
cagggcgccaagccgctgacgccggcggagctggaggcgcagctggtggagaaggcccgc
aagtggcaccagctcaactccaagcgctacggcgacaagcgcaagttcgggttcgtcgag
gcgcagaaggaggacatgcctccggagcacgtccgcaaaatcatcagagaccatggagac
atgtcctccaagaagtacaggcatgacaaacgtgtttatcttggagcactcaaatttgtg
ccccatgctgtctacaaactactggagaacatgccgatgccttgggagcaggttcggcat
gtgaaagtcttgtatcacattactggggctatcacttttgtaaatgaaatcccatgggtt
gtggaacccatctaccttgcacagtggggtacaatgtggatcatgatgcggagagagaag
agggataggcgacattttaaacgaatgcgctttcctccatttgatgatgaggaacctcca
ctggactatgccgataatctgttggatgttgaacccctcgaggccatacaattggagttg
gacagcgaagaagatgcagctgtctatgaatggttctatgatcacaagcctcttatgaag
accaagcttataaatggccccagctacaggaaatggcatctatctcttcccataatggca
acattatatcgcctttctggccagctgttgtcagacctgattgataggaattatttctac
ttatttgacatggagtctttctttactgccaaggcacttaatatgtgcattccagggggt
ccgaagtttgagccgctgtaccgtgatatggagaagggtgatgaggactggaatgagttt
aatgacataaataaactcatcatacgccagccacttcggactgagtacaggattgctttc
cctcatctgtacaataacaggccaaggaaagtgaaacttggggtctatcataccccaatg
ataatgtatatcaagacagaggatccagatctgccagcattctactacgatcctttgata
aatcctatcacttcaactaacaaggttgatcgtcgggagaggaaagcaactgaagaggac
gatgatgaagatttttgtctcccagaagacgtggagcctctcttgaaaagcactgaactc
tacactgatacaacagctgctggtatatcattactttttgctccaaagccttttaacatg
agatctggcagaacacgtcgtgctgaggacattcctcttgtatcagagtggtacaaggag
cattgcccaccagcttatcctgtgaaagttcgtgtgagttaccagaagctgttgaagtgc
tatgtactcaatgagctacatcataggcctcccaaggctcagaaaaagaaacacctgttc
cgttcactccaagctacaaagtttttccaaactactgagcttgactgggcagaggcaggc
ttgcaagtttgcaagcaggggtacaacatgctgaacttgttgattcacaggaagaatctt
aactatcttcatttagactacaatttcaatttgaaacccgtgaagactcttacaacaaag
gaaaggaagaaatctcgttttggaaatgcattccatctgtgtcgtgagattttacgactt
actaagttggttgttgatgctaacatccagttccgtctgggaaatgttgatgctttccag
ttggcagatggtctgcaatatatattctctcatgttggccagttaactggtatgtatagg
tacaagtatcgattgatgaggcagattaggatgtgcaaagatctgaagcacttgatatat
taccgtttcaacactggccctgttggaaaaggacctggctgtgggttctgggctccaatg
tggagagtgtggctcttcttccttcggggtattgtcccattattggagcgctggttaggt
aacctgttggcaaggcagtttgagggtagacattcgaagggtgtagccaaaacagtgaca
aagcaacgtgttgagtctcattttgatttagagcttcgtgctgcagttatgcatgatgtt
ctagatgctatgccagagggcatcaagcaaaacaaggcccgaactatactacagcatctt
agtgaggcatggcgatgctggaaggcaaatatcccatggaaagtccctggtctgcctgtg
cctattgagaacatgattcttcgttatgtgaagtcaaaggcagattggtggacaaatgtt
gctcactacaaccgtgagcgtatcaggcgtggtgctacagttgacaagactgtttgtcgg
aaaaatcttggaaggttgactcgtctgtggctgaaggcagaacaagagagacaacacaat
tacttgaaagatgggccatatgtaactcctgaggaagctgttgctatttatacaacaaca
gttcactggctggaatcaagaaagttctcgccaattccttttccaccactatcatacaag
catgacaccaaacttcttatacttgcactggaaagactgaaggaatcatacagtgtagca
gttaggttgaaccaactgcaacgagaggagcttgggttgattgaacaagcgtatgataat
cctcatgaagcactgtcaaggataaaaaggcatcttcttactcagcgcgctttcaaagaa
gttggcatagaattcatggacctgtacagctacttgattccagtatatgaaattgaacct
cttgaaaaaatcactgatgcataccttgaccaatacttgtggtacgagggggacaaacgc
catctcttcccaaattgggttaagcctgctgattcagaaccaccacctctgcttgtttat
aaatggtgccagggcataaataatttacaggatatatgggacacaagtgatggacagtgt
gttgtgatgctccagacaaaatttgagaagttctttgaaaaaattgatctgactctgttg
aacaggcttcttcggttggtcttagatcataacatagctgactatgttactgcaaagaac
aatgttgtgctgtcttacaaggacatgagccacacaaattcttatggtctcattagaggg
cttcagtttgcatcttttgttgttcagtattatggccttgtgctggatctcttgattctc
ggtctgacacgtgcaagtgagattgctgggccacctcaaatgccaaatgagttccttaca
tttgctgacacaaaaattgagacaaggcatcccatcagattgtattctcgatatattgac
aaggtgcatatattgttccgcttcacccacgaggaagcacgggatttaattcagcgttac
ttgacagaacatcctgatcctaacaatgagaacatggtaggttacaataacaagaaatgt
tggcctagagatgcgaggatgaggctgatgaaacatgatgtaaatcttggaagaagtgtg
ttctgggacatgaagaatcgccttccaaggagcattacaaccttagaatgggagaatagc
tttgtctctgtttacagcaaggacaatccaaacctactttttagtatgtgtgggtttgag
gtccgaatactgccaaagatacggatgactcaggaggcattcagcaacacaaaggatgga
gtatggaatttgcagaatgaacaaacaaaagaaaggacagcaattgccttcctcagagtc
gatgatgagcatatgaaagtgtttgagaaccgtgtccgacagattctaatgtcatcaggg
tcaacaacattcaccaagatagtcaacaagtggaatactgctctcattggccttatgaca
tatttccgtgaagcaacagtccatacgcaggagcttttggatttacttgtcaaatgtgaa
aacaagatccagactcgtattaagattggtctgaattcaaagatgcctagtaggtttcct
cctgttatcttctatacacctaaagaaattggaggtcttggtatgttgtcgatgggtcat
attcttataccacaaagtgatcttaggtacagtaagcagacagatgttggtgtaacacat
ttccgaagtggtatgagccatgaagaggaccagcttattcccaacttgtatcgctacatc
cagccatgggagagtgagtttattgattcacagcgtgtttgggctgaatatgctttgaag
aggcaggaagcacagtcacagaacagaagattaactcttgaggatcttgaggactcatgg
gatagaggtatacctcgtatcaacactcttttccaaaaggaccgccatacgctagcatat
gacaaaggatggagagtgagaactgattttaagcaatatcaagtgctgaaacagaatcca
ttctggtggacacatcagcgacatgatgggaagctttggaacctaaataactacagaact
gatgtcattcaagcacttggtggtgtagaaggtattctggagcatacactatttaaagga
acttatttccctacttgggagggtctcttttgggagaaggcatcaggtttcgaagagtct
atgaaatacaagaaacttacaaatgcacagcgttctgggctcaaccaaatccccaataga
agatttaccctgtggtggtcaccaaccatcaatcgtgcaaacgtgtatgttggtttccag
gtccagctagatcttacagggatattcatgcatggcaaaatcccgacattaaagatttct
ctaatccagatcttccgtgcgcatctgtggcagaagatccatgaaagtgttgttatggat
ctttgccaagttttggatcaagagttggatgccctggagatagagactgtacagaaagag
acgatacatcccaggaagagttacaagatgaacagttcctgtgcagatgtcctccttttt
gctgcacacagatggcagatgtcaaagcctagcttagtttctgagtcgaaggatctcttt
gatcagaaagcaagtaacaagtattggattgatgtgcaactgcgttggggagattatgat
tcacatgacatagaacgttatacaagagccaagttcatggattacacaacagacaatatg
tccatctacccgtcaccaactggggtgatgattggaattgatctagcatataatctgcac
tccgcttttggcaactggttccctgggtcaaagcccctacttcagcaagcaatgaacaag
atcatgaagtcaaatcctgctctgtatgtgctgagggagagaataaggaagggtctgcag
ttgtactcatctgaacccactgaaccatacctgtcctcacagaactatggagagatcttc
agcaatcaaatcatatggtttgtggatgatacaaatgtgtatcgagtcaccattcacaaa
acatttgagggtaacttgaccacaaaaccaatcaatggtgctattttcattttcaatcca
agaactggtcagctctttcttaaggttatccacacaagtgtatgggcggggcaaaagcgt
cttggacagctggccaagtggaaaacagctgaggaagttgctgcattagttcgatccctt
cctgtagaagagcagccaaagcaaattattgtgacaaggaagggtatgttggatcccttg
gaggtccatctacttgatttccctaacattgttatcaagggcagcgaactgcagcttcct
ttccaggcttgcttaaagattgagaagtttggtgaccttattctgaaggcaactgaacca
cagatggtcctttataatatatatgatgattggttgaaaagtatctcttcatacacagca
ttctctcgtatcgtacttattctacgggctctacatgtgaacaacgagaaggcaaagatg
ttactcaaacctgacaaaacaattgttaccgaaccacatcacatatggccaactttgagc
gatgaacagtggttgaaggttgaatgtgcactaagggacctcattctttctgattatgcc
aagaaaaacaatgttaatacttctgcactgacacaatctgaaatccgagatatcatactt
ggtgcggaaattgctccaccatcacagcagaggcaacagattgctgagattgagaaacag
tctagagagacgactcagttaaccgctgttaccacaaggacgacgaatgtacatggagat
gagctcattatcacgacaacaagtccatacgagcaacaagcatttgcatcaaagactgat
tggcgtgtcagagcaatctctgccacaaacttgtatcttcgtgtcaatcacatttatgtc
aattctgatgatataaaggagactggctacacttacattatgccgaagaacatattgaag
aagttcatatgcatagcagatctgcggacgcagattgctggattcttgtatgggctgagt
ccacaggacaatcctcaagttaaagagatcaggtgtatagccattcctccacagcatggt
actcaccagatggtgactctgccagcaaatcttcctgagcatgagttccttaatgacctg
gaaccattgggatggatgcatacacagccgaatgaagctccacagctatcaccacaggat
ctgacatcacatgcaaaaattctggagagcaacaaacaatgggatggtgagaagtgcatc
attctgacatgcagcttcacgccaggatcttgctccttgactgcatacaagctgacacca
agcggttacgagtggggacgcagcaacaaggacaatgggagcaacccacatggatacctc
ccaactcattacgagaaggtccagatgcttctgagtgaccgcttccttggcttctacatg
gttccagataacaccccttggaacttcaacttcatgggtgtgaagcatgacccgctgatg
aagtacaatatgaagctgggcatgccccgggacttctaccacgaggaccaccggccaaca
cacttcttggagttcagcaacatcgaggagggtgaggtcgcggaaggggatagggaggac
accttctcatag
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integrated database retrieval system
