Panicum virgatum (switchgrass): 120702754
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Entry
120702754 CDS
T07260
Name
(RefSeq) zinc finger CCCH domain-containing protein 49
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120702754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120702754
Spliceosome [BR:
pvir03041
]
Complex B
Other components
Prp19-related factors
120702754
Complex C
120702754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_12
zf-CCCH_2
zf-CCCH
zf-CCCH_3
RRM_occluded
RRM_YTH1
RRM_3
zf-CCCH_4
zf-CCCH_PARP12
zf-CCCH_10
Motif
Other DBs
NCBI-GeneID:
120702754
NCBI-ProteinID:
XP_039842611
LinkDB
All DBs
Position
4K:complement(5741124..5744757)
Genome browser
AA seq
496 aa
AA seq
DB search
MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYFAE
EHDRRARAGIDYDSSYGKARPNDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPETGELSQQNIKDRYYGVNDPVAMKLLSKAGEMPSLTPPDDETIRTLYIGGLDSRVT
EQDLRDQFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGVRLKLMWGK
PQAPKPEEDESGRQGQVSHGGLLPRAVISQQQGSDQPQPPGMEGQHQPQAPASYYFNIPA
PPAAERTLYPSMDPQRMGAVVKSQDGEGKPGPQQAGQAQPSSSSGQGGYPAPPPYYHGQY
PPYYPPPPYGSYMHPPRMPYPPQYPPYQPMLAPPAQAHASSSQQPAQAGQQPPHGPPAQA
QQPAPGPSAQQQPSQN
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaccggctgctgcgggacgcgcaggcggacgggtgggagcggtcggacttcccc
atcatctgcgagtcatgcctcggcgacaacccctacgtccggatgttaagagcagaatat
gacaaagagtgcaaaatatgtgcacgcccttttactgtcttccgctggagacctggccgg
gatgcaaggtacaagaaaacagagatctgccagacatgttgcaagctgaaaaatgtctgc
caggtctgcctgctagatcttgagtatggtctaccagttcaggtccgggatacagcactc
gctatcaattcgaacgatgcaattccaaggagtgatgtcaatcgtgaatattttgcagaa
gagcatgatcgaagggccagagctggcatagactatgattcttcctatgggaaggcccgt
ccaaatgataccattctgaagcttcagaggacagcaccatattacaagaggaacagggct
cacgtttgcagtttctatgtgcgtggtgaatgtactagaggtgctgagtgcccatatcga
catgagatgcctgaaaccggggagttatctcagcagaacatcaaagatcgttactatgga
gttaatgatccagttgcaatgaaacttttgagtaaggcaggtgagatgccatccctgaca
ccaccagatgatgagactataaggacactatatattggtggactcgatagcagagtaact
gaacaggatttgagggaccagttttatgcccatggtgagatcgagtccataaggatggtg
cttcagcgtgcatgtgcatttgtgacatacactacaagagaaggcgctgagaaggctgca
gaggagcttgctaacaaactagttatcaagggtgtgcgactgaagctcatgtggggcaag
cctcaggctccaaagcctgaagaggatgaatcgggaaggcaggggcaggtttcccatgga
ggactgctccctagggctgtcatatctcagcagcagggcagcgaccagcctcaacctcct
gggatggagggccagcatcagccacaagcaccagcttcatactactttaacattccagct
ccaccggcagcagagcggactctgtacccgtccatggatcctcagaggatgggtgctgta
gttaagtcacaggatggcgaaggcaaaccagggccgcagcaagctggacaagctcagcca
tcaagcagttcaggacagggcggctatcctgcgccaccaccatactaccatggtcagtac
ccaccatactatccacctccaccatatggaagctacatgcatccacctcgcatgccctac
ccaccccagtatccaccataccagccaatgctagcaccaccagcacaagctcacgcaagc
tcatctcagcaaccagcgcaagcaggacagcagccacctcatggccctccggctcaggca
cagcagccggcgcctggcccttcagcacagcagcagccatcccagaactga
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