Panicum virgatum (switchgrass): 120702797
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Entry
120702797 CDS
T07260
Name
(RefSeq) heparanase-like protein 3
KO
K07964
heparanase [EC:
3.2.1.166
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00531
Glycosaminoglycan degradation
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00531 Glycosaminoglycan degradation
120702797
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pvir00536
]
120702797
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.166 heparanase
120702797
Glycosaminoglycan binding proteins [BR:
pvir00536
]
Heparan sulfate / Heparin
Enzymes
120702797
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_79n
Motif
Other DBs
NCBI-GeneID:
120702797
NCBI-ProteinID:
XP_039842677
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Position
4K:complement(6216090..6219714)
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AA seq
571 aa
AA seq
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MAAAGLRLLGAVWLSAALLLRLGAAASAAVAVVDGRRAIAATGEDFVCATLDWWPPDKCD
YGTCAWGRAGLLNLDLSNKVLLNAVRAFSPLKLRLGGSLQDKVLYGTADLRQPCTPFAKN
DSEMFGFTQGCLPLRRWDELNSFFQKSGAKIVFGLNAMNGRVQLPDGSMGGPWDYTNAAS
LIQYTAYKGYHIHGWELGNELSGSGVGTRIGADQYAADVITLKTIVDDIYRSNPSKSLVL
APGGFFDPAWFTELIVKTKPNLLNVITHHIYNLGPGRDTNLIEKILNPSVLDGMISIFSN
LQGILKSAGTSTVAWVGEAGGAYNSGHHLVTDAFVFSFWFLDQLGMSAKYDTKSYCRQSL
IGGNYGLLNTTTFQPNPDYYSALLWHRLMGTKVLATTFNGTNKIRAYAHCARDSPGITLL
LINLSGNTKTEVSVTAHAAAAAAAGAHKHVARTGYTTAQVSVTNQAAGGGGGGGEHKHGA
RRHGRNFGHAHTPSFAAVADGATRDEYHLTPKGGDLRSQVVLLNGKALATGADGSIPRLE
AVKVDAARPIAVAPYSIVFARISHFHAPACS
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcggggttgcggcttctcggagccgtgtggctctcggcggcgctgctgctg
cggctgggcgccgcggcgtcggcggccgtggccgtcgtggatggccggcgcgccatcgcg
gcgacgggggaggacttcgtgtgcgcgacactggactggtggccgccggacaagtgcgac
tacggcacctgcgcctggggccgcgccggcctgctcaacctggatctctccaacaaggtc
ttgctcaatgccgtcagagcgttctcgccgctgaagctccggctgggaggctcgctgcag
gacaaggtgttgtacggcaccgccgacctccggcagccgtgcacgccgttcgccaagaac
gactcggagatgttcggcttcactcagggatgcctgcccctgcgccggtgggacgagctc
aactcattcttccagaaatccggtgccaagattgtgttcgggctgaacgcaatgaatggt
cgggtccagttgccggatggatctatgggagggccatgggattacaccaatgcagcatcg
ctgattcagtatactgcatacaagggctaccatattcatggatgggagcttggaaatgaa
cttagtggtagtggagttggaacccgaatcggagctgaccagtatgcagcagatgtgatc
accctgaaaacaatagtcgacgacatataccgaagcaatccatccaagtcgctggtactt
gctcctggaggatttttcgacccagcctggtttacagaacttatcgtcaaaaccaagcca
aatctattgaatgtgatcacccaccacatctacaacttaggaccaggaagggatacaaat
ctgattgaaaagatcctcaatccgtcggtcctcgacggaatgataagcatattcagcaat
cttcaggggatactgaaatccgcagggacatcgaccgtcgcatgggttggggaagctgga
ggggcttacaacagcggccaccaccttgtcactgatgcatttgtgttcagcttctggttt
ttggatcagcttgggatgtcagcgaagtatgacacaaagagctactgcagacagagtttg
attggcggcaactacggcctgctgaacaccacaacatttcaaccgaaccctgactattac
agtgctttactgtggcatcgcctgatgggaaccaaagttctagcaacaacattcaatggt
accaacaagatccgcgcttacgcccactgcgctagagattcgccaggaatcactctactg
ctgatcaacctcagtggcaacaccaagactgaagtctcagtgacagctcatgccgccgcc
gccgccgccgctggtgcgcacaagcacgtcgcaagaacgggctacaccacggcccaggtc
tcagtgacaaaccaagctgccggcggcggcggcggcggcggtgagcacaagcacggcgcg
aggaggcacggcaggaatttcgggcacgcccacacccccagcttcgcggcggtggccgac
ggcgccacgagagacgagtaccacctcacgcccaagggcggcgacctgaggagccaggtg
gtgctgctgaacggcaaggccctggccaccggcgcggacgggagcatccccaggctggag
gcggtgaaggtggacgcggcgcggcccatcgccgtggcgccctactccatcgtgttcgct
cggatttcacatttccatgccccggcatgtagttag
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