Panicum virgatum (switchgrass): 120702801
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Entry
120702801 CDS
T07260
Name
(RefSeq) THO complex subunit 4B-like isoform X1
KO
K12881
THO complex subunit 4
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
pvir03015
mRNA surveillance pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120702801
09122 Translation
03013 Nucleocytoplasmic transport
120702801
03015 mRNA surveillance pathway
120702801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120702801
03041 Spliceosome [BR:
pvir03041
]
120702801
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120702801
TREX complex
120702801
Spliceosome [BR:
pvir03041
]
Complex C
Other components
EJC/TREX
120702801
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120702801
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
Motif
Other DBs
NCBI-GeneID:
120702801
NCBI-ProteinID:
XP_039842683
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All DBs
Position
4K:complement(6273067..6275478)
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AA seq
248 aa
AA seq
DB search
MAGALDMSLDDLISKNKKTQPRPSGRGPASGGGGPAPTAPRRRFNARAAAAPYHRGTTFP
FQAQARRPMAYAGYGAPQPQPPMDAPTKLYISNLDYGVSNDDIKELFSDVGDIQRYSINY
DRSGRSKGTAEVVFSRRSDALAALKRYNNVQLDGKPMKIEIIGTNIEAPPMATFSFNPPS
GNFNGLFRSRPGRGGDGGWPRGRGGFGGRGRGQGSRGRGRGGRGGEKVSAEDLDADLDKY
HKAAMETS
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atggccggcgccctcgacatgtccctcgacgacctcatctccaagaacaagaaaacccag
ccgcgccccagcggccgaggcccggcctccggaggcggaggccccgcacccacggcgccg
cgccgtcgcttcaacgcccgcgcagccgcagccccgtaccaccgcggcaccactttccct
ttccaggcgcaggcgcggcggcccatggcttatgctggatacggagccccccagccccag
ccgccgatggacgcgcccaccaagctttacatctccaacctcgactatggcgtctccaac
gacgacatcaaggaactattttctgatgtcggcgatatccagcgttactccatcaactat
gacaggagtggaagatcaaaggggaccgcagaggttgtcttctcaagaaggtctgatgct
ctagctgctcttaagaggtacaacaatgtgcagcttgatggcaaacctatgaaaattgag
atcattgggacaaatattgaggcgccaccaatggctaccttctccttcaatccaccatct
ggaaacttcaatgggcttttcagaagcaggcccggaagaggtggtgatggaggatggcct
cggggtagaggtggattcggtgggcgtgggcgggggcaagggagccgtgggcgagggagg
ggagggcgtggcggtgagaaagtttcagctgaagatctggatgcggacttggacaagtac
cacaaagcagcaatggagaccagctaa
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