Panicum virgatum (switchgrass): 120702835
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Entry
120702835 CDS
T07260
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 23-like
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120702835
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120702835
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120702835
Peptidases and inhibitors [BR:
pvir01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
120702835
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
120702835
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
120702835
NCBI-ProteinID:
XP_039842729
LinkDB
All DBs
Position
4K:complement(6654985..6661129)
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AA seq
927 aa
AA seq
DB search
MAEVSTAAAPEGVLHRRIEFHLARRPHAAVTAGGGGFRMETLNPQAAGKAGALAAAGSSE
GETRRSEKGNAGGIDPELSVARIYLGRIGAGLRNLGNTCYLNSVLQCLTYTEPFAAYLQS
GKHKSSCRTSGFCALCALQNHVKTALQSTGKIVTPSDIVKNLRCISRSFRNSRQEDAHEL
MVNLLESMHKCCLPSGVPSESQSAYEKSLVHKIFGGRLRSQVKCTRCLHCSNKFDPFLDL
SLDIAKATTLVRALQNFTEEELLDGGQKQYQCERCRQKVVAKKRFTIDKAPNVLTVHLKR
FSPFNPREKIDKRVEFQPVLDLKPFVSDSKGSDFKYSLYGVLVHAGWNTQSGHYYCYVCT
SSGMWHNLDDNQVRQVREADVLRQKAYMLFYVRDSIGNPVARKDNSTANLTTKKTPEKIS
TLNGITQGSVKAEHLNGSFPFGDKMHNASNGYSSIFGKTSGDHFSKNEVKAENAAASQSN
GLSSTRALGPRNDGVTLPAKSIQCSVNGQETSSSHQPLSIANTFGKQTVAGRSLQEMEPK
AEAGKSTYAASPMVNGAGTLSKADKLTSQPQTTPLSKPTAHVNDTSAGLTSQTSLKKDSI
VSNGVVPGSGSLTSSEKAKNLPRSVEQANDIVMALPMSQNKTAPEVAQVKCGQQISSGGS
VQVAVAASCNGTTAQKANLKSKKFVRYPVVNMWLGSKKLLVASLKPGKKTKHKRTRRRLV
DCKDVANISCLGDSMNDQLTSTSATAQSEAVECTSVRQKRSHASERPGNDTQSSKNKQKV
NGACVDTETNAPSANVDIPTSGSSSSVDQTQSRKHVDAQLGVPQPVSIRASDLVEATVPC
WDDIDMPNTKVAEPQHKKRKSLGYVLDEWDEEYDRGKTKKVRNSKQDFGGPNPFQEEANY
ISQRKSKQKSYKGKSWNKPNMTEGLRI
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggtgtcaacggcggcggcgccggagggggtgctgcaccggaggatagagttc
cacctcgcccggaggccgcatgccgcggtgaccgcggggggcggcgggttccggatggag
acgctgaacccgcaggccgcaggtaaggctggggccctggcggcggcggggagcagcgag
ggggagacgaggaggtcggagaaggggaacgctggcgggatcgatccggagctcagcgtc
gccaggatctacctcgggagaattggtgctggtttgcgaaatcttggtaacacctgctac
ctcaactcggttttgcaatgcttgacgtacacagagccgtttgcagcctatttgcagagc
gggaagcacaagtcctcatgtcgtacctctggattttgtgcattatgtgctctgcagaat
catgtcaagacggctctacagtcaactggaaaaatagtgacaccgtcggatattgtgaag
aacttacgctgcatttcccggagtttccgtaattcaagacaagaagatgcacacgagtta
atggttaatttgctcgaatccatgcataaatgctgcctaccttctggggtaccaagtgag
tcgcaaagtgcctatgaaaaaagcttagtccacaaaatatttggtggccgccttagaagt
caggtgaaatgcacacggtgcttgcattgttccaataaatttgatcctttcttggacctt
agtcttgatattgccaaggccacaactttagtgcgggcacttcaaaattttaccgaggaa
gagctactagatgggggtcaaaagcaataccagtgtgaacgctgcaggcagaaagttgta
gcaaagaagaggtttacaattgataaggctccaaatgtcctgacagttcatctgaagcgc
tttagccctttcaatccccgtgaaaaaattgacaaaagagtggaattccaaccagttctc
gacttgaaaccatttgttagtgattctaaaggttcagatttcaaatacagcctttatggt
gtcttagttcatgctggttggaacactcaatcgggtcactactattgctatgtttgtaca
tccagcgggatgtggcacaatcttgatgataaccaggtgcgccaagttcgtgaggcagat
gtattgaggcagaaggcctatatgctattttatgtgcgtgacagtattgggaatcccgtg
gcgcgcaaagataatagcactgctaatttgaccacaaagaaaacccctgaaaagatctct
acccttaatggtattacccaaggcagtgtaaaagcagaacatttgaatggttcgtttcca
tttggtgataagatgcacaacgcaagcaatggctattctagcatttttggcaagacttca
ggagaccatttttcaaagaatgaagtcaaagctgaaaatgcagcagcctctcaaagcaat
ggcctgtcttccacacgagctcttggacctcgaaatgatggtgttaccttgcctgctaaa
tcaattcagtgttctgtaaatggccaggagacctcttcttcccatcaacctttatcaatt
gccaatacttttggtaaacaaacagttgctgggaggtctttgcaagaaatggaacctaag
gctgaggcagggaaaagtacttatgctgcttctcccatggtcaatggtgctggtacattg
tccaaggcagataaacttacttctcaacctcaaacaactccattgtcgaagccaactgcc
catgtaaatgacacatctgcagggcttacttcacagacttcattaaagaaggattctatt
gtttcaaatggcgtcgtgcctggctctggatctcttacttccagtgagaaagccaagaac
ttgccaagatctgttgagcaagctaatgacatcgtaatggcacttcctatgagccagaac
aaaactgcaccggaagttgcacaagtcaagtgtggacaacagatcagctctggtggttct
gtgcaggttgctgtggctgcttcatgcaatggcacaacagctcaaaaggcaaatttgaag
tcaaagaagtttgttaggtatcctgttgtgaacatgtggttaggttccaaaaaactgttg
gtggcttcactaaagccagggaagaaaacaaaacacaagcgaactagaagacgtcttgtg
gattgcaaggacgtggcaaatatatcttgtttaggtgacagcatgaatgatcagctgaca
tcaacatcggcaactgcacaatctgaagccgtagagtgtacttccgtccgtcagaaacgc
tcacatgctagtgaaaggcccggaaatgatactcagtcctccaaaaacaagcagaaggtt
aatggagcatgtgttgatactgagacaaatgcaccttctgctaatgttgacattccaacg
tctggttcaagctcttccgtagaccagacgcaatcaaggaaacatgtagatgctcagttg
ggagtgccccaacctgtcagtattcgtgcgtcggacctggtggaagctactgttccgtgc
tgggatgacatagacatgccaaataccaaggttgcggagccgcaacataaaaaacgcaaa
agccttggttacgtcttagatgagtgggacgaggagtacgacagaggaaagacaaagaaa
gtccggaactcaaagcaagatttcggcgggccaaaccccttccaggaggaggcaaactac
atctcgcagcgcaagtcaaagcaaaaatcttacaaaggcaaatcctggaacaagcctaac
atgacagaagggttgagaatatga
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