Panicum virgatum (switchgrass): 120702889
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Entry
120702889 CDS
T07260
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120702889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120702889
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120702889
Spliceosome [BR:
pvir03041
]
Complex C
Other components
Step II factors
120702889
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
ResIII
FtsK_SpoIIIE
ATPase
AAA_30
ABC_tran
SLFN-g3_helicase
AAA_16
AAA_29
DUF5872
Motif
Other DBs
NCBI-GeneID:
120702889
NCBI-ProteinID:
XP_039842792
LinkDB
All DBs
Position
4K:7161148..7168445
Genome browser
AA seq
695 aa
AA seq
DB search
MPSFSAGASTQKQQNYQRRRQQIREQRKSLPIASVEKRLVDEVRKNDTLIIVGETGSGKT
TQLPQFLYDGGFCQDGKVIGITQPRRVAAVTVAKRVAEECNDQLGKKVGYSIRFDDSTSN
ATRIKYMTDGLLLREALLDPLLSKYSVIVVDEAHERTVHTDVLLGLLKKVQHSRANASKN
GKTLPNVGHSQNLTQKACQGTRCAPLKLIIMSASLDAKCFSDYFGGAKTVHIQGRQYPVD
ILYTYQPESDYLDATLVTIFQIHLEEGPGDILAFLTGQEEIESLERLINERARLLPPESS
KIWTAPIYSSLPSEQQMNAFKSASAGTRKVVLATNIAETSVTIPGIKYVIDPGMVKARAY
NPVTGMESLIIIPVSKAQALQRSGRAGREGPGKCFRLFQESEFDKLVDSTVPEIKRCNLS
NVVLQLKALGIDDIIGFDFMEKPSRTAILKSLEQLILLGALTDDYKLSDPVGHQMARLPL
DPMYSKALIVSSEFKCLEEMLIVVSMLSVESILFFPREKIEEARAARKGFESSDGDHITL
VNVYRAAAECLEKSKNANAKERTMDKALTRWCRENFINHRSLKHARDVHSQIQGHVQQMG
LNQSSCGEDMALFRRCLTAAFFLNAAMRQPDGSYRALATSQSVQIHPSSGLFRTKPDCVI
FNELVRTTQNYVKNLTRIDPLWLAELAPQYYATED
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccttctctgcgggtgcctccacgcagaagcagcagaactaccagaggcggagg
cagcagattcgggaacagcggaagtcgctccccattgcttcagtggagaagaggctagtt
gacgaggttaggaagaacgacacacttatcatagtcggcgagactgggagtggcaaaact
actcagctacctcaatttttatacgatggtgggttttgtcaggatggtaaagtcattggc
atcactcagcctcgaagagttgcggctgttacagtagctaagcgtgtagctgaggaatgt
aacgaccagctgggcaaaaaggttggatactctatcagatttgatgattccacatccaat
gcaacacggattaaatatatgactgacggtttgcttctgagggaagcacttttggatcca
cttttgtccaagtatagtgttatagtggttgatgaggctcatgaaagaactgtccatact
gatgtattactgggtttattgaaaaaggtgcaacattcccgggccaatgccagtaagaat
gggaagactttgcctaacgtgggccattctcaaaatttaactcagaaggcatgtcaggga
acaagatgtgctcctctgaagctgataattatgtctgctagtttggatgccaagtgtttt
tctgattattttggtggtgccaaaactgtacatattcaaggtcggcagtatcctgttgac
atactatatacttatcagcctgagtcggattatcttgatgccactctagttactatcttt
cagattcatttggaggaaggacctggagacattctcgcatttctaactggccaggaggag
attgaatcacttgagagacttattaatgagcgtgctcgtttacttccaccagaaagtagt
aagatatggaccgcacctatttattcatctctcccgtcagagcagcaaatgaatgctttt
aagtcagcatcagctggaacccgcaaggtagttctagcaaccaatattgctgagacttct
gtaacaatacctggcatcaaatatgttattgatcctgggatggtaaaagctcgtgcttac
aatcctgtgactggaatggaatcattaatcatcatcccagtttcgaaagcacaggctctt
caaaggagtggtcgtgctggacgtgaggggcctgggaagtgcttccgattgttccaagaa
agtgagtttgataaactggtagattctactgtgcctgagatcaagcggtgcaacctatca
aatgttgttttgcaactcaaggctcttggaattgatgacatcataggttttgattttatg
gagaaaccatcaaggactgctattttgaaatcgttggagcagttaatcttactaggggct
ctgactgatgattataaactgtcagatccagttggccatcagatggctaggctgcctttg
gatccaatgtactccaaggcactaatagtgtcaagtgaattcaagtgcttggaagaaatg
ctgattgttgtatctatgctttcagtggaatcaatccttttcttcccacgcgagaagata
gaagaggcaagagctgcccggaagggttttgaaagctcggatggggaccatatcaccttg
gtgaatgtctatcgcgcagctgcagaatgcttggagaagagcaaaaatgcaaatgccaaa
gagagaacaatggacaaggctttgaccagatggtgcagggaaaactttatcaaccaccgg
tctctaaagcatgctcgtgatgttcacagtcaaattcagggtcatgtccagcagatgggt
ctcaaccagtcatcatgcggagaggacatggctctgtttcggagatgcctcacagctgcc
ttcttcttgaacgcagcgatgcgacagccagatggatcgtacagggctcttgcgacaagc
cagagcgtccagatccatccttcttctgggcttttccggaccaagccggactgtgtcatc
ttcaacgagctggtccggacaacgcagaattacgtcaaaaacctgacccggatcgaccca
ttgtggctagcggagctcgccccacagtactacgctacagaggattga
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