Panicum virgatum (switchgrass): 120702970
Help
Entry
120702970 CDS
T07260
Name
(RefSeq) NF-X1-type zinc finger protein NFXL1-like
KO
K12236
transcriptional repressor NF-X1
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120702970
04121 Ubiquitin system [BR:
pvir04121
]
120702970
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
120702970
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
NFX1 proteins
120702970
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_NFXL1
zf-NF-X1
R3H
RRM_R3HCC1L
Motif
Other DBs
NCBI-GeneID:
120702970
NCBI-ProteinID:
XP_039842899
LinkDB
All DBs
Position
4K:9507855..9512050
Genome browser
AA seq
1138 aa
AA seq
DB search
MQPSTDRRRGGGPVATASRPVWRPRSSAPAAGPDAAAAAPILPLPTPAAEVRPPHRRSRR
PNHGNNHNRRPAPPQEQSDSAGHQRRPAPPQEQNGNADHHRRPAPHQEQNGNAGHHRRGP
PPERPAPAAPAPASARVRTPAPPPPAAAAIGRDGSVPQLVQEIQDKLARGAVECMICYDM
VRRSAPIWSCDSCFSIFHLPCIRKWVRSPASAADASPAADPASPSWRCPGCQSVYTTPAR
DLAYNCFCGRQRDPPNDHFLTPHSCGEPCSKPLERAEPPGAKGEDADATRCPHVCVLQCH
PGPCPPCKAFAPDRPCPCGKQIIVRRCADRSTPVTCGRPCERMLPCKRHRCEKVCHTGPC
GDCSVVISARCFCGKKNEALPCGDMVVKGKLSEEDGVFSCSEPCGHTLACGNHVCKDMCH
PGPCGECEFMPGKVTTCHCGKTRLQESRASCLDPIPTCDKICDKKLPCGVHNCKVNCHEG
ECPPCLVRVEQKCRCGSSGRMVECYQVKKEEFHCNKPCGRKKNCGRHRCSECCCPLSRKF
AQLEGGDWDPHLCQISCGKKLRCGQHACQLLCHSGHCPPCLETIFTDLTCACGRTSIPPP
LPCGTPTPSCSHQCSVPQPCGHPASHSCHFGDCPPCVVPVMRECIGGHVMLRNIPCGSKD
IRCNQPCGKNRQCGIHACNRTCHPAPCDQPLANGDANSSSGGKASCGQVCGAARRECKHT
CTAPCHPSSQCPDLRCEFPVSITCSCGRITATVPCGAGGSSSSDNMFEVSIIQKLPMPLQ
PVESNGRRVPLGQRKLSCDDECAKMEKKRVLAEAFDITPPNLDALHFGENSSASDLVSDL
FRRDPKWVVAIEERCKFLVLGKVRGSSSNNLKLHVFCPMLKDKRDAIRLIADRWKLSVQS
AGWEPKRFITIHVTPKSKPPARILGSKAGAPVTATHPYFDPLVDMDPRLVVAMLDLPRDA
DVNALVLRFGGECELVWLNDKNAIAVFNDPARAATALRRLDYGSAYQGAAMFMPSSAQAS
SSGNVWVGGQKDGGLAARSNPWKKAEPDLPTGDWTGVAGHAPASGWRGANTATQVMGTQN
RWNVLESDAATSSGPSEDRKTARTDAGYSAAPNSGNTGPSVSKLQPDIEVDDWEEACE
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgcagccctccaccgatcgccgccgcgggggtggacccgtggccaccgcctcccgcccc
gtgtggcgcccgcgctcctccgccccggccgcgggccccgacgccgccgccgccgccccg
atcctgcccctccctaccccggccgcggaggtccgcccgccccaccgccgctcgcgccgt
cccaatcacgggaacaaccacaatcgccgccccgccccgcctcaggagcagagcgacagc
gcgggccaccagcgccgcccggccccgcctcaggagcagaacggcaacgcggaccaccat
cgccgccccgccccgcatcaggagcagaacggcaacgccggccaccatcgccgtggcccg
ccgcccgagaggccggctcccgctgcgcctgcccccgcctccgcccgtgtgcgcacccct
gctccgcctcctccggcggcggcggcgattgggcgcgatgggtcggtgccgcagctggtc
caggagatccaggacaagctggcgcggggagcggtggagtgcatgatctgctacgacatg
gtgcggcggtcggcgcccatctggtcctgcgacagctgcttctccatcttccacctcccc
tgcatccgcaagtgggtgcgctccccggcctccgccgccgatgcctccccggcggcagac
cctgcctccccgtcctggcgctgcccggggtgccagtccgtgtataccactcccgcccgt
gacctcgcctacaactgcttctgcgggcgccagcgggatccccccaacgaccacttcctc
acgccccactcctgtggcgagccctgctccaagccactggagagggcagaacccccaggc
gccaagggggaggatgcagacgccaccaggtgcccacatgtctgcgtcctgcagtgccac
ccggggccgtgcccgccctgcaaggcatttgcaccggacaggccctgcccctgtgggaag
cagatcatcgtgcggcggtgtgcggaccgcagcacgcctgtgacctgtggccgcccgtgc
gagcggatgctgccctgcaaaaggcatcgttgcgagaaggtttgccacacagggccttgt
ggagattgttctgttgttatctctgcgcggtgcttctgcgggaagaagaatgaggccctg
ccatgtggagacatggtggtgaaggggaagctgtctgaggaggacggggtgttttcttgc
agtgaaccctgtggtcacacacttgcttgtgggaatcatgtctgcaaggatatgtgccac
ccaggaccttgtggtgagtgcgagttcatgccagggaaagtcactacatgccattgtggc
aagacaaggctgcaggagagtagggcaagttgcttggacccgatcccaacctgtgacaag
atctgcgataagaaattgccatgtggggtgcataattgcaaggtcaattgccatgaggga
gagtgcccgccttgcttggtccgtgttgagcagaagtgccgctgtggctcatcaggccgg
atggtggagtgttaccaggttaagaaggaagagttccactgcaacaagccttgtggccgc
aagaagaactgtgggaggcatcggtgcagtgagtgctgttgtccactgtcaaggaagttc
gctcagcttgaaggtggtgactgggatccccatctctgccagatatcatgtgggaagaag
ctccgctgtgggcagcatgcatgccagctactctgccacagcggtcattgcccgccctgt
ttggagactatattcactgatctcacttgtgcctgtggcagaacttctatcccgccacct
ctgccttgtggcacaccaactccatcatgctcacatcagtgttcagtcccccagccttgt
ggccatccagcctcacattcatgtcattttggagactgtccaccttgtgtcgtgccagta
atgagagaatgcattgggggacatgtaatgctgaggaacatcccctgtggatcaaaggat
atcaggtgcaaccaaccatgtggcaagaatcgccaatgtggaatccatgcttgcaacagg
acttgccatcctgccccttgtgatcagccacttgcaaatggggatgctaactcaagctct
ggtggcaaagcttcttgtggacaggtatgtggtgctgctaggagagaatgtaagcataca
tgcactgccccatgccacccatcatcacaatgcccagatttgagatgtgaattccctgtg
tctattacctgttcttgcggccgtatcactgcaactgttccttgtggtgctgggggatcc
tccagcagtgataatatgtttgaagtctccatcatacagaagttgccaatgccactccag
cctgtggaatcaaatgggaggagggtgccccttgggcagaggaagctttcttgtgatgat
gagtgtgcaaagatggagaagaagagggttcttgctgaagcatttgacatcacccctccc
aatttggatgcattgcattttggtgagaactcaagtgcatcagatttggtttctgacttg
ttccgtcgcgatccaaagtgggtggtggccatagaagagaggtgcaagttccttgtactt
ggcaaggtgaggggcagttcttcgaacaatcttaaactgcatgtcttttgtcccatgttg
aaggacaagagggatgctatcagactcattgcagaccggtggaagctttctgttcagtca
gctggttgggagcccaagcgttttattaccatccatgtcacacccaagtcgaaaccgcct
gctcgcatccttggctccaaggcaggtgcccctgtcacagctacccatccctactttgat
cctctggttgacatggatccgaggctggtcgttgcaatgctggacctgccacgggatgct
gatgtcaatgctctagtcctaaggtttggcggggaatgtgaattagtctggctgaatgac
aagaatgccatagctgtcttcaatgatccagctagagcagcaacagctctgaggcggctg
gattatgggtctgcttaccagggtgctgcaatgtttatgccaagcagtgctcaggcatct
tcttcaggtaatgtgtgggttggaggacagaaggatggagggcttgctgctaggagcaat
ccatggaagaaggctgagcctgacctgcccaccggagactggactggtgtggctggccat
gctccagcatcaggttggagaggcgccaacaccgcgactcaagttatggggacacagaac
cgatggaatgttctggaatctgatgctgccacaagctcaggcccaagtgaggatcggaag
actgctcgcacggatgccggatacagtgcggcacctaattctgggaacactggaccatcg
gtgagcaagctgcagccggacattgaggtggacgactgggaagaagcttgcgaatga
DBGET
integrated database retrieval system
