Panicum virgatum (switchgrass): 120702996
Help
Entry
120702996 CDS
T07260
Name
(RefSeq) alanine--tRNA ligase, chloroplastic/mitochondrial-like isoform X1
KO
K01872
alanyl-tRNA synthetase [EC:
6.1.1.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
120702996
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pvir01007
]
120702996
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120702996
Enzymes [BR:
pvir01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.7 alanine---tRNA ligase
120702996
Amino acid related enzymes [BR:
pvir01007
]
Aminoacyl-tRNA synthetase
Class II (C/G)
120702996
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
120702996
Prokaryotic type
120702996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2c
tRNA_SAD
DHHA1
Motif
Other DBs
NCBI-GeneID:
120702996
NCBI-ProteinID:
XP_039842931
LinkDB
All DBs
Position
4K:complement(9835202..9841631)
Genome browser
AA seq
994 aa
AA seq
DB search
MEVAALSPTSRPAPLLPTAPAHRRRLLPPRFVSGRRLRPSPRHQGFGCVRDGWAQRHSAR
KTGFFVTSSSSASLEPATQEVGTAVPGEWSGDAIRRQFLEFYAARGHKILPSSSLVPDDP
TVFLTIAGMLQFKPIFLGKEPRRVPCATTSQKCIRTNDIENVGRTARHQTFFEMLGNFSF
GDYFKKEATAWAWELATKEYGLPAERLWISVFEDDDEAFDIWHNEVGVPKEHIKRMGAED
NFWTSGATGPCGPCSEIYYDFYPERGSSDAVCKDSYDLGDDSRFIEFYNLVFMQYNKKDD
GSLEPLKQKNIDTGMGLERMARILQNVPNNYETDLIFPIIEKAASLALVPYAKADEAMKT
NLKIIGDHMRAVVYLISDGVLPSNIGRGYVVRRLIRRVVRMGRLIGIRGDGHGNLEGAFL
PSLAEVVISLSTQIDPDVESRRKSIIGELQREELRFVQTLERGEKLLDELLDEALLSAGN
NGNKHSLSGKDVFLLYDTYGFPVEITAEIAGERGVTVDMMGFSIEMENQRKQSQAAHNVV
KLSVGNEIEIVKSIPDTEFLGYDSLFATAVVKGLLVNGNPVNKVSEGSEVEILLDRTPFY
AESGGQVGDNGFLYLNGGEDRKQTTVIEINDVQKSLGNIFVHKGTIRQGSVEVGNEIDAS
VDPKLRRGAKAHHTATHLLQSALKSVVGSETSQAGSLVAFDRLRFDFNFHRSLSEEELMK
IESLVNQWIGNATHLETKVMALQDAKNAGAIAMFGEKYGEEVRVVEVPGVSLELCGGTHV
SNTAEIRGFKIISEQGIASGIRRIEAVAGDAFVDYVCARDNYMRCLCSSLKVKAEDVNGR
VDTILEELRATRNEVSSLRSKIAVLKAASLASKATTVEPHNVRVVVENMGDVDADGLKSA
AEYLLGTLQDPAAVILGSSPGDGKVSLVAAFSPAVVKMGLQAGKLVGGVAKLCGGGGGGK
PNFAQAGGRKPEKLPDALEKARAEIAAAVSSSSS
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggccgctctctcccccacctcccgccccgcccccctcctccccaccgcgccc
gcccaccgccgccgccttctccctccccgcttcgtctccggccgccggctccgcccctcc
cctcgacaccaagggtttggctgcgtgagagatggctgggcacaaaggcattctgctcgt
aagaccgggttcttcgtaacaagcagctcgtcagcatcattagaacccgcaacacaggaa
gtgggcaccgcagttcctggcgagtggagcggggacgcgatacgccggcagttccttgaa
ttttatgctgcccgcggccacaagattctccctagctcttcgcttgtgcccgatgaccca
acggtgttcctcaccatcgcagggatgcttcagttcaaacctatatttcttggcaaggaa
cctaggcgtgttccatgtgccactacctcccagaagtgtataagaacaaatgacattgaa
aatgtgggacgcacagctcgacaccagaccttctttgagatgcttgggaacttcagcttt
ggcgattacttcaagaaggaagcaactgcttgggcatgggagctggcaactaaggagtat
ggtttacctgcagaaaggctgtggattagtgttttcgaagatgatgatgaagcattcgac
atctggcacaatgaggttggtgtgccaaaagagcatataaagaggatgggtgcggaagat
aacttttggactagtggagcaactggaccctgtggaccatgctctgaaatttattacgac
ttctatcctgagagaggatcatcagacgctgtgtgtaaagattcttatgatttgggtgat
gatagtcgattcattgaattttacaatctcgtctttatgcaatacaacaaaaaggatgat
ggatcactagaaccattgaaacaaaagaatatcgatacaggaatgggccttgagcgtatg
gcacgaattcttcaaaacgttccaaacaactacgagacagacttgatcttcccaattata
gaaaaggcagctagcttggcgttggtgccctatgctaaagctgatgaggccatgaagact
aatcttaaaataatcggcgatcacatgagagcagttgtttatcttatatcagatggggtc
cttccctcaaatattgggagaggatatgttgttcgaaggctgataagaagagtagttcgg
atgggtagattgatagggataagaggtgatggtcatggaaacctggaaggtgcattttta
ccttcactggccgaggtagtgatcagccttagcactcagatagatccagatgtcgaatca
cgaaggaaatctattattggagaacttcaaagggaagagctacgattcgtccagaccttg
gaaagaggtgaaaagttattagatgaacttctagatgaggccttattaagtgctggtaat
aatggaaataaacattccctttctggaaaggatgttttccttttgtatgatacatatggt
tttccagtagagattacagctgaaatagctggtgaacgaggtgtcactgttgatatgatg
ggatttagtattgaaatggaaaaccaaaggaaacaatctcaggctgctcataatgtagtc
aaactttctgtaggaaatgagattgagatagtcaagagcatccctgacactgaatttctg
ggatatgactctctctttgctactgctgttgttaaaggtctcctagttaacggaaatcca
gttaataaagtttctgaaggttctgaagtagaaatattattagatcgaacaccattctat
gctgaatcaggtggtcaagttggagataatggtttcttatatttgaatggaggggaggat
agaaaacaaacaacagtcatagaaatcaatgacgtccaaaaatctctgggaaatatattt
gtgcacaaaggcacaattaggcaggggtctgtagaggttggcaacgaaattgatgcttct
gttgatccaaagttgaggcggggggctaaggcacatcatactgcaacacatttactacaa
tctgctcttaaaagtgtggttggttcagaaacttcacaggctggttcccttgtggcgttt
gaccgtctccgatttgacttcaatttccatcgctccctttctgaagaggaattaatgaaa
attgaatcactcgtcaaccaatggattggcaatgcaacacatcttgagacaaaagtcatg
gccttgcaagatgcaaaaaatgctggtgcaattgcaatgtttggagaaaaatatggtgaa
gaggtcagagttgtagaggtccctggggtctcattggaactctgtggtggaactcatgtc
agtaataccgctgagattcgtggcttcaagataatctcagaacagggaatagcttctgga
atcagaaggatagaggcagttgcaggtgatgcatttgttgattatgtttgtgctcgggac
aactacatgcgctgcttgtgttcatctcttaaggttaaggctgaagatgtgaatggcaga
gtagacacaattcttgaggagctaagagcaaccagaaacgaagtatcatctctacgcagc
aaaattgcagtgctcaaagcagcatctcttgcaagtaaagccacaaccgttgaaccccat
aatgtcagggtcgtggtcgagaacatgggcgacgtggacgccgacgggctgaaaagcgcc
gccgagtatctcttaggcaccctgcaagaccctgccgcggtgatcttgggatcgagcccg
ggagacggcaaagtcagcttggtcgccgccttcagccccgccgtcgtcaagatggggctg
caggcgggcaagttggtgggcggcgtcgcgaagctctgcggcggaggcggcgggggtaaa
cccaacttcgcgcaggccggcggccggaagccggagaaattgccggacgccctcgagaag
gcccgggccgagatcgccgcggcggtgtcgtcgagctcgagctga
DBGET
integrated database retrieval system
