Panicum virgatum (switchgrass): 120703189
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Entry
120703189 CDS
T07260
Name
(RefSeq) DNA mismatch repair protein MSH2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120703189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120703189
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120703189
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
Motif
Other DBs
NCBI-GeneID:
120703189
NCBI-ProteinID:
XP_039843133
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Position
4K:12836702..12844981
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AA seq
942 aa
AA seq
DB search
MEGDDFTPEGGKLPELKLDARQAQGFISFFKKLPQDPRAVRLFDRRDYYTAHGENATFIA
RTYYHTMSALRQLGSSSDGISSASVSKAMFETIARNILLERTDRTLELYEGSGSSWRLTK
SGTPGNIGSFEDILFANNDMQDSPVIVALFPVFRESQLYVGLSFLDMTNRKLGLAEFPED
SRFTNVESALVALGCKECLIPADCEKSIDLDPLQNAIRNCNVLLTERKKADFKSRDLAQD
LGRIIRGSVEPVSDLLSQFDYAVVALGALLSYAELLADDTNYGNYTIEKYNLNCYMRLDS
AAVRALNIAEGKTDMNKNFSLFGLMNRTCTVGMGKRLLNRWLKQPLLDVNEINNRLDMVQ
AIVENPELRQGLRQQLKRISDIDRLTHSLRKKSANLQPVVKLYQSCSRVSYIKGILQQYN
GQFSTLIRTKFLDPLEAWMTENRFGRFASLVETAIDLDQLDNGEYRISPLYSSDLAVLKD
ELSVVEDHINNLHMHTASDLDLSVDKHLKLEKGPFGHVFRISKKEEQKVRKKLTSNYIII
ETRKDGVKFTSPKLKKLGDQYQALFSEYTSCQKKVVDDVVNVSGTFSEVFENFAVVLSEL
DVLQSFADLATSCPVPYVRPDITASDEGDIILQSSRHPCLEAQDSVNFIPNDCTLVRGKS
WFQIITGPNMGGKSTFIRQVGVNVLMAQVGSFVPCDQASISVRDCIFARVGAGDCQLRGV
STFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVTRAPTLFAT
HFHELTALAHRNDDEHLHVSDVGISNYHVGAHIDPSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPEAVVALAKSKAAELEDFSTTPTFSEDSKDEVGSKRKRVFSPDDVTRGAARARLF
LDEMAALPIHEMDGSKTMEIASKLKADLLKDAADNPWLQQFL
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgacgacttcaccccggagggcggcaagctccccgagctcaagctagatgcg
aggcaggcgcagggcttcatctccttcttcaagaagctgccgcaggatccccgggccgtt
cgtctcttcgatcgcagggattattacactgctcatggtgagaatgcaacatttattgca
aggacctactaccacacaatgtcagccttgcgtcaactaggtagcagctctgatggaatc
tcaagtgccagtgttagcaaggctatgtttgagaccattgcacgcaacattttgttggag
cggactgaccgtacattggagctctatgagggaagtgggtcgagttggaggttaacaaag
tctggaactcctggaaatattggtagttttgaagacattctgtttgcaaataatgacatg
caagattcaccagtcattgttgctctttttccagtattccgggaaagtcagctgtatgta
gggcttagttttttggatatgaccaacaggaagcttgggttagccgagttccctgaagat
agccgattcacaaatgttgaatcagcacttgttgcattaggttgcaaggagtgtcttatc
ccagcagattgtgagaaatccattgatttggatccccttcaaaatgccattaggaattgt
aatgttctattgactgaaagaaagaaggctgacttcaaatccagagatcttgcacaagat
cttggtagaataatcaggggttctgttgagccagtttctgacctgctatctcagtttgac
tatgctgttgttgcccttggagctctgttatcttatgctgagttgctagcagatgatact
aactatggaaattacacaattgagaaatacaatttgaactgctacatgagacttgattct
gctgcggtgcgagcactaaacattgcagaagggaaaactgatatgaacaagaacttcagt
ttgtttggtttgatgaacagaacctgtactgttgggatgggaaagagattgctgaacaga
tggctgaaacaacctctgttagatgtaaatgaaatcaataacagattagatatggttcag
gctatcgtagaaaacccagagcttcgtcagggactcaggcagcaacttaaaaggatatca
gatattgatcgtcttacacattcactccgaaagaaatcagccaatctgcagcctgttgtt
aagctttaccagtcttgttccagagtctcgtacatcaagggtattcttcagcaatacaat
ggccaattttccacattgataaggacaaagtttcttgacccattggaagcatggatgaca
gagaatcgatttggtaggtttgcttctcttgttgagacagctattgaccttgatcagctg
gacaatggagagtacagaatatctcccctatattcttctgacttagctgtgctgaaggat
gagctttctgttgttgaagatcacataaataatttgcacatgcatacagctagtgatctg
gatctttctgttgataagcacctgaagctagaaaaaggaccatttggacatgtgttcaga
atctcaaagaaagaggagcagaaagtcaggaagaaactcactagcaactacataattata
gaaactcgtaaagatggcgtgaagttcactagtccgaagctgaaaaagcttggtgatcaa
taccaggcactgttcagtgagtacacaagttgtcagaaaaaggttgttgatgatgtagtg
aacgtttcaggcaccttctcagaggtatttgaaaattttgctgtggttctgtcagagttg
gatgttttacaaagttttgctgatttggcaactagttgcccagttccttatgtaaggcca
gacattacagcatcggatgaaggagatattattctacaaagtagcagacatccttgtctg
gaagcacaagatagtgttaactttatacccaatgattgcactctggtaagagggaagagt
tggtttcagatcatcactgggccaaacatgggaggaaaatccacgtttataagacaggtt
ggtgtaaacgttttgatggcacaagttggttcctttgttccttgtgatcaagcaagtatt
agtgtgagagattgtatttttgctcgtgttggtgctggtgattgccaacttcgtggtgta
tcaacctttatgcaagaaatgcttgaaacagcatccatcctgaaaggtgccactgataag
tctcttataattattgacgagctgggacgtggaacttccacatatgatggttttggtctc
gcatgggctatctgtgagcatctagtggaagtgactcgagcacctaccctttttgcaacc
catttccatgaattaactgcattagcacatagaaatgatgatgagcacctgcatgtttct
gatgttggaatttcaaattatcatgtgggtgctcacatagacccatcaagtcggaagtta
actatgctttacaaggttgaacctggggcatgcgaccaaagttttggtattcacgttgca
gaatttgctaattttccagaagctgttgttgctcttgcaaaaagcaaagcagcagagtta
gaagacttttctactacacccaccttttctgaagattcaaaagacgaggttggatcaaag
cgaaagagggtatttagcccagatgatgtgacaagaggggctgctcgggctcggcttttc
ctggacgaaatggcagcattgcctatacacgagatggatgggagcaagaccatggagata
gcctccaaactgaaagccgacttgctgaaagatgcagctgacaatccttggcttcaacag
ttcctctga
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