Panicum virgatum (switchgrass): 120703192
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Entry
120703192 CDS
T07260
Name
(RefSeq) trafficking protein particle complex II-specific subunit 130 homolog
KO
K20307
trafficking protein particle complex subunit 10
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120703192
Membrane trafficking [BR:
pvir04131
]
Endosome - Golgi transport
Tethering complex
TRAPP complex II
120703192
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Gene cluster
GFIT
Motif
Pfam:
TRAPPC10_1st
TRAPPC10
Foie-gras_1
NTS_TR130
TPR_1
bL31_N
TPR_2
Motif
Other DBs
NCBI-GeneID:
120703192
NCBI-ProteinID:
XP_039843137
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Position
4K:complement(12878993..12891257)
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AA seq
1240 aa
AA seq
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MANYLAQFQTIKSSCDRIVIAVEDVSDLWLNVKESFERRVPVKKACLNNKARNPVFVDNL
PAEFIQTTDSRLRSRFPQEQYLFWFREPYATVVLVTCEDLDEFKTILKPRLKLIVQNDER
EWFIVFVSKAHPSNDQATKMANKVYARLEAEFNTKKRERCCKFDLHGPDAEFWDDFDSKM
MDCVRNTLDRRIQFYEEEIRRLSEQRFTPIWNFCNFFILKESLAFMFEMSNLHEDSLREY
DELELCYSESVTSPGKHREFGGLDTGDDQAALLNPGFKALTQIVQDDVFREFEFRQYIFA
CQAKLLFKLSRPIEVAARGHAFVVGFSKTLALHENSLPFCFREVWVITACLGLIKSTTSH
YDGGAVSVDSEKEFYRLQGDLYSLCRIKFMRLAYLIGYGVEIEKSPVNSASLSMLPWPKP
AIWPSIPPDSSAEVMEKEKMILQSKSREKLFNIYRKPLPLEPSLLLREANRRRAFLSVGN
LSELYDSADGSGLDANSKLSPNRSASNFMARTLSGPAMSETSLPVDRPMRLSEIHVAAEH
ALKQTISDPDFMTSLSSVEEFEKRYMELTKGAADNYHRSWWKRHGVVLDGEIAALFFKHG
NYDLAVKSYEKVCALYSAEGWEELLADVLPDLAECQKILNDEAGYLASCVKLLSLDSTLF
SSKERQAFQSEVVRLAHSEMKHLVPLDVSSLITFAGNAGPPLELCDGDPGTLSVAVWSGF
PDDITLESLSLRLSASSSADEGIKAIKSSDSHVLKPGRNTISFDIPPQKPGSYVLGALTG
HIGKLSFRSHGFSQDGPVETDEFMSFEKPTRPVLKVRKPRALVDITPAVSSALLMNELQW
IGLIVKPIDYSLKGGILHIDAGAELKIEQSQMIEIENYRGDMDHAGSANSTAEAGKVEKI
PIENGKIELPDWASDVTTLVWFPVRAIDDTIARGESPASPQKQNIVDGMRMIALKLEFGV
FHNQVFERTIAVHFTNPFHVSTRVVDKCNDGTLLLQVILRSEVKATLHVKDVQLDLQSGF
EHLGKGDGRPASSLFPLVVAPSSRAGILFIIRLSGTKDLDEVENADSMLNIKYGISGERT
TGAHSPVPVQPGDSEELLFKIALRLKRPVLDPCLAVGFLPFSTDCLRVGQLVNMRWRVER
LKSLEDASVSGDEVLYQVDANPQNWMVAGRKCGHVSLSNEQGSRMEITVTCIPLVSGYVH
PPQLGLPEVGEVNISCNPAGPHLVCVLPPALSTSYCIPAA
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atggcgaactacctcgcgcagttccagaccatcaagtcctcctgcgaccgcatcgtcatc
gccgttgaggatgtgagcgacttgtggctcaatgtcaaggagagttttgagcgtcgtgtg
ccagtgaaaaaggcctgtctaaacaacaaggccaggaatcctgtttttgttgataatcta
ccagctgagtttatacaaacaactgattcaaggttgcgtagtcgatttccgcaagaacaa
tacttgttctggttccgggaaccatatgctactgttgttcttgtcacttgtgaggatctt
gatgaattcaagaccattcttaagcctcgcctcaaattaattgtgcaaaatgatgaacgc
gaatggtttattgtgtttgtgtccaaggcccatcctagcaatgatcaagcaactaagatg
gcaaataaagtatatgctaggcttgaggctgaattcaacaccaaaaagagagaaaggtgc
tgcaaatttgatctccatggacccgatgcggaattctgggatgatttcgactctaaaatg
atggactgcgtaagaaacactttagacaggcggatccaattttatgaagaggaaatccgg
aggttaagtgagcagcggtttactccgatatggaacttctgcaacttcttcattctgaag
gaaagcttggcgttcatgtttgagatgagtaatctccatgaagattcactccgtgaatat
gatgaacttgaactatgctactcagaatcagtgacctctccagggaaacatcgagaattt
ggaggattagatactggtgatgatcaggctgcactgctaaatccaggattcaaagcactg
acccaaattgttcaggatgatgtattcagagagtttgagtttagacagtacatatttgct
tgccaggctaagctattgtttaaattgtctcgtccaattgaggttgctgccagaggacat
gcttttgttgttggcttttccaagacacttgccttgcatgaaaattccctcccattttgc
ttccgtgaagtatgggtgataactgcatgtttgggtttgataaagtctacaacttcacat
tatgatggtggggctgtttctgttgattcagagaaagaattctatcgtcttcagggtgac
ctttattctctctgccgtattaagtttatgaggcttgcttacttgattggttatggggtt
gagatagaaaagagtccagtcaacagcgcatctttaagcatgctaccatggccaaagcca
gctatatggccttcaattccacctgactcatcggcagaagtaatggagaaggagaagatg
attcttcaatcaaaatcaagggaaaagctcttcaacatttacaggaaacctctgccacta
gaaccttctttacttctacgtgaggctaataggcgcagagcttttctttctgttggaaat
ctgtcggagttatatgattcagctgatggttcaggtttagatgccaattcaaaactttct
cccaacagatctgcttctaacttcatggcaagaacactgtcaggtccagcgatgtcggaa
acttctctgccagttgatcggcccatgaggttgtcggaaattcatgttgcagctgaacat
gctctgaaacagacgatatcagatcctgattttatgacatcactttcatctgtagaagaa
tttgagaaaagatatatggagcttaccaaaggtgcagctgacaattatcaccgctcctgg
tggaaaagacatggagttgtgcttgatggagagattgcagctctgttctttaaacatgga
aattatgatctggctgtgaaatcctatgagaaagtttgtgctctctattctgcagaaggc
tgggaagagctgttggcagatgttcttcctgatcttgcagaatgccagaagattcttaat
gatgaagctggttacttggcgtcctgtgtaaagttactttctctggacagcaccttgttt
tcatctaaagagaggcaagcttttcagtcagaagtcgttcgacttgctcacagtgaaatg
aagcatcttgtgccacttgatgtctcatcactaattacatttgctggaaatgctggtcca
ccactagaattatgtgatggagatcctggtaccctatctgtagcagtttggagtggcttc
ccggatgacatcacactggagtctctcagtttaagattgtcagcttcatctagtgcagat
gaaggtatcaaggcaataaagagttcggactctcatgttctcaaaccaggtagaaatacc
atctcttttgacattccacctcaaaagcctggttcctatgtgttgggtgctcttactgga
cacattggcaagctgtcattcagatcacatggattttctcaagatggtccagtggaaacc
gatgaattcatgagctttgagaagccaacaagacctgttttgaaggtgagaaaaccaagg
gctttagttgatattactcctgctgtctcctctgcattgctcatgaatgagctccaatgg
attggattaatcgtcaagccaatagactattctctaaaaggtggcatattgcatatagat
gctggtgccgaactgaaaatagagcagtctcagatgattgagatagaaaattacagaggt
gatatggaccatgctggttctgctaatagcactgctgaagctggaaaggttgaaaagatc
ccaattgaaaatgggaagatagaacttccagattgggctagtgatgtaactactcttgtt
tggtttcctgttcgtgctattgatgatactattgctagaggagaatccccagcatctcct
cagaagcagaacatagttgatgggatgagaatgattgctctcaagcttgaatttggtgtt
ttccataatcaagtattcgaaaggaccattgcagtacatttcactaacccattccatgta
agcacacgtgttgtagacaagtgcaatgatggaaccctacttctacaggtgatactgcgc
tctgaagtgaaggccactctgcatgtaaaggatgtacagttagatcttcaatctggattt
gagcacttgggcaagggagatggccgaccagcatcaagtttattccctctcgttgttgct
ccttcttccagagctggaattctattcataatacggttaagtggcacaaaagatctggat
gaggttgaaaatgcagacagcatgctgaatatcaagtatggaatatctggtgaaagaaca
actggagcacattctccagttcctgtccaacctggtgattctgaagagctcttgttcaag
attgcattgagactgaagcgacctgtcctggatccatgtctagcagttggattccttcca
ttttctaccgattgcctcagggttgggcagttagttaatatgagatggagagttgaaagg
ctgaaaagcctggaggatgcatccgtatctggcgatgaagtactttatcaggttgacgca
aacccccagaactggatggtggccgggaggaaatgtggtcatgtatcattgtcaaacgag
caaggttcaaggatggaaatcacggtgacatgcatcccgctggtgtccgggtacgtccac
ccgccacagctgggcctgccggaggtgggcgaggtgaacatcagctgcaacccggcgggg
ccccacctggtgtgcgtcctccctccggccctcagcacctcctactgtataccggcggcg
tga
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