KEGG   Panicum virgatum (switchgrass): 120703223
Entry
120703223         CDS       T07260                                 
Name
(RefSeq) protein decapping 5-like
  KO
K18749  protein LSM14
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120703223
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     120703223
SSDB
Motif
Pfam: LSM14 FDF SM-ATX
Other DBs
NCBI-GeneID: 120703223
NCBI-ProteinID: XP_039843179
LinkDB
Position
4K:13770496..13776838
AA seq 645 aa
MAAAAAGAPESYIGSVISLTSKSEIRYEGVLYTINTEESSIGLRNVRSFGTEGRKKDVQQ
IPASDKIYEYILFRGSDIKDLQVKSSPPAQPATLHNDPAIIQSHYPRPVSSSTSLPPAAS
TTSADTTSHNAPSAIQMPSPFQGNLPPFQPGANLQSWNSSPMPSSANGAGLTMPPMYWPG
YYTPPTGFPHLQPPPFLRPPHSLTVPQALQPPVHYPGLNGSLPAGFPSMPELPSFLQPGN
SNSLSQSLGVSTSVSAPASLSTSVTESSGSQMPNRLSSISASVFSVGLTPPSVSPSISTV
EPSMLVSLGMPSLVNSKPVAVPDSTVPSLSSDKPVSVPSSQLPSANDASPVNVAEQVTLV
TPGQLLPTASSIVTPSQALQTASATIPPSKVASFTVPSSQATSVVPSSQATLSTASPLKV
ASSSVLSEEVQVIGENKTVKQREWKAKQPVVNPSGNKEPLLPAPKPVLEKPVGASSYVQY
NNRGRGRGRGRGRGNGLSRPITKFTEDFDFMAMNEKFNKDEVWGHLGKSTGQLNDDPNDY
EDDVLEDEISPRKPEAKPVYVKDDFFDSLSCNTIDNGGKSGRIKFSEQRKIDTETFGDSA
RHRPMGMRGGRGPRGGGGSRGRGYYGRGYGYMGRGRGYSYPNHQS
NT seq 1938 nt   +upstreamnt  +downstreamnt
atggcggcggcggcggcgggggcgccggagtcgtacatcgggagcgtgatcagcctcacg
tccaagagcgagatccggtacgagggtgtcctctacaccatcaacaccgaggagtccagc
atcgggctcaggaacgttcgctcatttggaactgaaggtcgtaagaaggatgtccaacag
attcctgccagcgacaagatatatgagtacatactctttcgagggagtgatataaaggat
ttgcaagtcaaatcctctccaccagctcagccggcaactttacacaatgatcccgcgatt
attcagtcacattatcctcgtccagtctcgtcgtctacaagcttgcctcctgctgcaagc
acaacatcagctgatactacttcacacaatgctccatctgcaattcagatgccatcacca
tttcaagggaatttgccacctttccaacctggcgcgaacttacagtcatggaactcatca
cctatgccatcatcagcaaatggcgccggcctaacaatgccaccaatgtactggccagga
tattacacaccacctactgggtttcctcatcttcagccaccaccctttcttcggccaccg
cacagtttgacagttccacaggcactgcaacctcctgtccactatcctgggcttaatgga
tccttaccagctgggtttccaagtatgccagagcttccttcttttcttcaacctggtaat
agtaatagtctaagtcaatctttaggcgtctcgacatcagtgtcagcacctgcttcattg
agtacatcagttactgaatcatcaggaagccaaatgccaaataggctatcctccatttcc
gcttctgtgttttctgtgggtttaactcccccgtctgtgagtccttcaatttctacagtt
gaaccctccatgctcgtgtcgctaggcatgccttctttggtgaacagtaagccagtagct
gtacctgactccactgtgccatctctctccagtgacaagcctgtgagtgtaccttcctct
cagctaccttcagctaatgatgcatcaccagtcaatgttgcggaacaagttacattggta
actcctggtcaacttctgccaactgcttcctccatagttactccatctcaggccttgcaa
actgcttctgctacgattccaccctctaaggttgcctccttcacagttccatcctctcag
gcaacctctgtggttccatcctctcaggctactttgtctacagcttcacccttgaaggtt
gcttcctcttctgttctgtcagaagaggtgcaagtgataggtgaaaataaaacagttaag
cagcgcgagtggaaggcaaaacagcctgtggttaatccgtctggaaataaggagcctctg
ttaccagcaccaaagcctgtacttgagaagcctgttggagcttcctcatatgttcagtac
aacaacagaggccgaggccgaggaagaggtcgtggtagaggaaatgggctttcacgtccc
ataaccaagttcacagaggacttcgatttcatggcaatgaatgagaagttcaacaaagat
gaagtatggggccatcttggtaaaagtacaggacagttaaatgatgatccaaatgattat
gaagatgatgttctagaagatgaaatatctcctagaaagccagaagctaagcccgtgtat
gttaaagatgacttctttgattcactctcttgcaacacaattgacaatggagggaagagt
ggaaggattaaattctctgagcagagaaaaatagataccgagaccttcggtgactcggca
aggcatcgaccaatgggcatgcgaggagggaggggcccccgtggtgggggtggttctcgt
ggccgcggctattatggtagaggatatggatatatgggtagggggcgtggatactcttac
cctaaccaccaatcatga

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