Panicum virgatum (switchgrass): 120703293
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Entry
120703293 CDS
T07260
Name
(RefSeq) protein-tyrosine-phosphatase IBR5-like
KO
K04459
dual specificity MAP kinase phosphatase [EC:
3.1.3.16
3.1.3.48
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120703293
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120703293
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
120703293
3.1.3.48 protein-tyrosine-phosphatase
120703293
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Dual specificity phosphatases)
MAPK phosphatases
120703293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSPc
PTP-SAK
Y_phosphatase
Init_tRNA_PT
Tc-R-P
DUF7803
PTPlike_phytase
Y_phosphatase2
Y_phosphatase3
Motif
Other DBs
NCBI-GeneID:
120703293
NCBI-ProteinID:
XP_039843252
LinkDB
All DBs
Position
4K:15092308..15096289
Genome browser
AA seq
273 aa
AA seq
DB search
MRKRERENPCGICGHYHKYEEGEVCGVCGHRPPAAPAAAGARQLDSAFPSEILKEFLFLG
SYDNASRSELLKTIGVSHILNTVPLCQNLYRNSFTYHCLQEDKTLQFDDAIQFLEQCERE
KARVLVHCMSGKSRSAAFVIAFLMKSRGWRLAQSFQWVKERRPQVQLSDGAQQQLIEYET
KLFGSNVSIPAPSFTPADSFPSLGFGFPKPAGEIQVPTFNQQAPASIFERVSPNNFPSNF
TFGAERTNEAKLPDSNSFGVMNSSGGDSMMDSS
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgaggaagcgtgagcgcgagaacccgtgcgggatctgcgggcactaccacaagtacgag
gagggggaggtgtgcggcgtctgcggccaccgcccgcccgcggcgccggcggcggcgggg
gcgaggcagctggactccgcgttcccgtcggagatcctcaaggagttcctcttcctcggc
agctacgacaacgcctcccgctccgagctcctcaagaccatcggggtctcgcacatcctc
aatactgtaccattatgccaaaacctgtaccggaattcattcacttatcactgccttcaa
gaggacaaaactctgcagtttgatgatgcaatccagtttctagaacaatgtgagagggag
aaagcacgtgtccttgtgcattgcatgtcagggaaaagtagatcggcagcatttgttata
gccttcttgatgaaatcaagggggtggagactggcacaatcttttcagtgggtgaaagaa
cggagaccacaagtacaactatctgatggggcacagcagcagttgattgagtacgaaacg
aagctttttggttccaatgtcagcatacctgctccatcttttactccagcagattctttt
ccttctcttggatttggttttcctaaaccagcaggtgaaatccaagtgcctacctttaac
cagcaggctccagcatccatctttgagcgtgtcagcccaaacaacttccctagtaatttc
acattcggagctgaaagaaccaatgaagcgaagcttccagatagcaatagtttcggtgtg
atgaactcgtctggtggcgatagcatgatggacagctcctaa
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