Panicum virgatum (switchgrass): 120703332
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Entry
120703332 CDS
T07260
Name
(RefSeq) chaperone protein ClpD1, chloroplastic isoform X1
KO
K03696
ATP-dependent Clp protease ATP-binding subunit ClpC
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
pvir03110
]
120703332
Chaperones and folding catalysts [BR:
pvir03110
]
Heat shock proteins
HSP100
120703332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_2
AAA_lid_9
ClpB_D2-small
AAA
AAA_5
Clp_N
AAA_22
Sigma54_activat
AAA_16
nSTAND3
NBD_SMAX1
AAA_14
AAA_7
IstB_IS21
NACHT
AAA_18
ATPase_2
TniB
Zeta_toxin
Torsin
Motif
Other DBs
NCBI-GeneID:
120703332
NCBI-ProteinID:
XP_039843302
LinkDB
All DBs
Position
1K:33507761..33512941
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AA seq
941 aa
AA seq
DB search
MEVCCCSTSSSVLAAGAARGGARRLAAAPARWGAAGFGTRAVVLVHPLPRPAAAAGPAPR
RARRGGVVRAVFERFTERAVKAVVLSQREARGLGEPAVAPRHLFLGLVAEDRSPGGYLSS
GINIERAREECRGIGSRDAGAPAAPKAGSGLDTDVPFSATAKQVFEVAVVLSKNMGSSFI
SPEHLAIALFTLDDPTTNNLLRSLGADPSQLASVAVDRLQAELAKDGRDPAGAPSFKVPE
KAPAAAGRSAFSQSLTKKKEKGALDQFCLDLTTQASGGFIDPIIGREEEIERVVQIICRR
TKNNPILLGEAGVGKTAIAEGLALRIANGDVPIYLVAKRILSLDVGLLIAGAKERGELES
RVTSIIREVREAGDVILFIDEVHNLIGTGTVGKGKGSGLDIGNLLKPALARGELQCIAAT
TLDEHRMHFEKDKALARRFQPVLVAEPSQEVAVKILLGLREKYETYHKCKFTLEAINAAV
YLSARYIPDRQLPDKAIDLIDEAGSRARMESFNRKKEGQSSILLKSPDEYWQEIRSAQAM
HEVVLSNKAKYSPNVNKQESGSSDVEVPYEDNSRSTSTSSLSADEPIVVGTEEIARVASL
WSGIPVQQLTADDKKLLVGLDDELRKRVIGQDDAVVAISRAVKRSRVGLNDPDRPIATLL
FCGPTGVGKTELTKALAASYFGSESAMLRLDMSEYMERHTVSKLIGSPPGYIGYGETGTL
TEAVRRKPFTVVLLDEIEKAHPDIFNILLQIFEDGHLTDSQGRRVSFKNTLIVMTSNVGS
TSISKGRRSIGFLKEDTESSSYVAMKSLVMEELKAFFRPELLNRIDEMVVFRPLEKTQML
AILDIILKEVKGRLLSLGIGLEVSDAMKDLICQEGYDKSYGARPLRRAVTHMIEDVISEA
ILFGEFKPGDTILMDIDAEGKPCMSHLDQQIVQVTDPTRAL
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgtgctgctgctccacctcgtcgtcggtgctcgcggcgggggcggcccgcggg
ggcgcccggaggctcgccgccgcgccggcgcggtggggcgcggcggggttcgggacgagg
gcggtggtactggtgcacccgctcccgcgccccgcggcggcggcggggccggcgccgcgg
cgggcgcggaggggcggcgtcgtcagggcggtgttcgagcggttcacggagcgggccgtc
aaggcggtcgtgctgtcgcagcgggaggcccgggggctcggggagcccgcggtggcgccg
cgccacctgttcctcggcctcgtcgccgaggaccgctcccccggcggctacctttcgtcg
gggatcaacatcgagcgcgccagggaggagtgccgcggcatcgggtccagggacgccggc
gcgccggcggcgccaaaggccggatcggggctcgacaccgacgtgcccttctccgcgacc
gccaagcaggtctttgaggtcgccgtcgtgctctccaagaacatgggatccagcttcatc
tcgccggagcacctcgccatcgcgctcttcaccctcgacgatccaaccaccaacaacctc
ctcaggagtttgggagctgatccaagtcagctagcatcagttgcggttgaccgtcttcaa
gcagagcttgcgaaagatggaagagaccctgccggagcaccatctttcaaagtcccagag
aaggctcctgctgcagctggaagatctgctttctcccaatccttgactaaaaagaaagag
aagggtgcactagaccagttttgtttggatttgaccacacaagctagtggaggtttcatc
gatcctattattggtcgtgaagaggagattgagagagtggttcagataatatgccgacgg
acgaagaacaatcctattcttttgggtgaggcaggagttgggaaaactgcaattgctgag
ggacttgctcttcgaattgcaaatggtgatgtccccatttatcttgtggcaaaacgtata
ttgtcactggatgttggtctacttattgctggcgctaaagagagaggtgaattggagtct
agggttactagtataattcgggaagtccgggaagcaggcgatgttattctttttattgat
gaggttcacaatcttattggaactggaactgttggaaagggtaagggttctggccttgac
attggcaacttgctgaagcccgcgcttgctagaggtgaactgcagtgcattgcagcaaca
actctagatgaacaccggatgcattttgagaaggataaggctttggcccgccgcttccag
ccagtattagtagctgagcctagtcaggaagttgctgtgaagatattgcttggtcttcgt
gagaaatacgaaacttaccataaatgcaaattcacattagaagccatcaatgcagcagtt
tatctgtcagcaagatatatccctgacagacagcttcctgataaggctattgatctaatt
gatgaggctggaagtagagctcggatggagtcatttaacaggaagaaggaagggcagtct
tcaattctcttgaagtcaccagatgaatactggcaagagataagatctgcacaggccatg
catgaagtggtgttatctaacaaggcaaaatattctccaaatgtgaataagcaagagagt
ggaagttctgacgttgaagtaccatatgaagacaatagcaggtcaacatcgacctcatca
ctctcagctgatgaaccaattgtagttgggacagaggaaattgcaagagttgcctcatta
tggtcagggataccagtgcagcagttgacggccgatgataaaaagcttctagtaggacta
gacgatgagctcaggaaacgggtcattggccaagatgatgcagttgtggccatatctcgt
gcagtgaagagatcgcgtgttggccttaatgaccctgatagacctatcgctacactgctt
ttctgtggtccaacaggagtcggtaaaacagagcttaccaaggctctagcagcaagttat
tttggatcggaatctgctatgcttagattagacatgagcgagtatatggagaggcacact
gtgagcaagctcataggctctcctccagggtacattggctatggtgaaactggtactttg
acagaagcagtcaggaggaaaccctttactgtggtattgctggatgagatagagaaagct
caccctgatattttcaacatccttctccaaatctttgaggatggacatttgacagactca
cagggccgcagggtttccttcaagaatacattgattgtgatgacttcaaatgttggttct
acatcaatttcaaagggaaggcggagcataggtttcttgaaggaagataccgagtcaagc
tcgtatgttgcaatgaaatccctagtaatggaagagctgaaggcatttttccgaccagag
ttgctcaacagaattgatgagatggttgtgttccgtcctctggagaagactcagatgctg
gccattcttgatatcatcctgaaggaagtgaagggcaggcttttgtcccttgggataggc
ttggaggtgtctgatgcaatgaaggatctgatttgccaagaagggtacgacaagagctac
ggggcacggccgctgcggagggctgtcactcacatgattgaggatgtcatcagcgaagcg
attctgttcggcgagttcaagcctggcgacacgattctgatggacatcgatgccgagggg
aagccatgcatgagccatctggaccaacagatcgtccaggtcactgacccaacacgggca
ctgtga
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