KEGG   Panicum virgatum (switchgrass): 120703375
Entry
120703375         CDS       T07260                                 
Name
(RefSeq) DNA repair protein RAD5A-like isoform X1
  KO
K15505  DNA repair protein RAD5 [EC:5.6.2.-]
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120703375
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    120703375
SSDB
Motif
Pfam: SNF2-rel_dom UBA_RAD5A Helicase_C HIRAN zf-RING_UBOX zf-C3HC4_3 zf-RING_2 zf-C3HC4 zf-C3HC4_2 Prok-RING_4 DEAD zf-C3HC4_4 zf-RING_5 ResIII RING_XB3-XBAT31 zf-ANAPC11 zf-RING_4
Other DBs
NCBI-GeneID: 120703375
NCBI-ProteinID: XP_039843359
LinkDB
Position
1K:33545125..33553777
AA seq 1027 aa
MGKEREREREREEQVAMVRAVLGDGMPEMDIIRALHMAGDDPTKAINILLDFDHKPPPPP
LRTTPSPSPPPGKPAKTLAESTPPSKAPARPKPTAEKPKAAPAPATTNVAGAGEHWWLVG
SAEMAGLSTCKGRRIAPGDAVTFSFPNAAAAAVAAGKSRPGRSSLASCSSEIMRFSTPNH
GEVGRIPNEWARCLLPLLKENKIKVQGTCKSAPEALSIMDTVLLSVSVYINSSMFHDQKQ
STPKAARVASEESTFYPLPALFKLIGLAPYKKAAFTPEDLYSRKRPMETKSSIGAPAIKL
RSENMRFVSGGNEDDQGEATVSDSDLDVIIGVSDSSALEERDPPDSLLCDLRPYQKQALH
WMLQLEKGSSSQNAATTLHPCWEAYKLEDKRELVLYLNVFSGDATTEFPSTLQLSRGGIL
ADAMGLGKTIMTIALLLSDSSKGCITTQNTTHIFGEASGLGESQDAVKKLASPFSFSRHK
TVKAPLIEGGNLIICPMTLISQWKAEIEAHTKPGAVNIYVHYGQNRPKDASFIGQSNIVL
TTYGVVSSEFSMDGSTEHGALYSVHWFRVVLDEAHMIKSSKSLISLAAAALTADRRWCLT
GTPIQNNLEDLYSLFRFLRVEPWRNWALWNKLVQKPYEEGDERGLKLVQSILKPIMLRRT
KNSTDNEGRPILNLPPANIEVKYCDLSEAEKDFYEALFRRSKVKFDQFVEQGKVLHNYAS
ILELLLRLRQCCDHPFLVMSRGDTQEFADLNKLAKRFLRSGNGPVNGDSSCLPSRAYIEE
VVQELQKGEGECPICLEAFEDAVLTPCAHCLCRECLLSSWRSATTGLCPVCRKSMSKQDL
ITAPTDSRFQIDVDKNWVESSKISALLQELEVLRSSGAKSIVFSQWTAFLDLLQIPLSRN
NFSFARLDGTLNLQQREKVIKEFSEDRGILVLLMSLKAGGVGINLTAASSAFVMDPWWNP
AVEEQAVMRIHRIGQTKTVSIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIE
ELKMLFS
NT seq 3084 nt   +upstreamnt  +downstreamnt
atggggaaggagcgggagcgggagcgggagcgggaggagcaggtggccatggtgcgcgcc
gtgctcggcgacggcatgccggagatggacatcattcgtgcgcttcacatggccggcgac
gaccccaccaaggccatcaacatcctcctcgacttcgaccacaagccgcccccgccgcct
ctccggacgacgccctcgccctcgcctccgccggggaaacccgccaaaaccctcgccgag
tcaaccccaccaagcaaagcccctgcccggcccaagcccacggcagagaaacctaaggcc
gcacctgcgcccgcgacaaccaacgtcgccggcgccggcgagcactggtggctggttggg
agcgccgagatggcggggctgtccacctgcaagggcaggcggattgcccccggggatgcg
gtcaccttctccttccccaacgccgcggccgccgccgtcgccgcggggaagagccgtcct
ggccgctcctccctcgcttcctgctcctccgagatcatgcgcttctccaccccgaaccac
ggggaggttggtcgcattcccaacgagtgggcgcgttgcctgcttcccctgctcaaggag
aacaagataaaagtccagggaacctgcaaatcagctcccgaggcgcttagcattatggac
actgtccttttgtcagtgagtgtatatatcaacagctcaatgtttcatgatcaaaagcaa
tcaacacccaaggcagctcgggttgcttctgaggaatccacattttatccactacctgca
cttttcaaattgattggacttgccccttataaaaaggctgcatttactccagaagatctt
tattccaggaagcggccaatggagacaaagagcagtattggagcacctgccataaagttg
agatccgagaatatgagattcgtttctggtggaaatgaagatgatcaaggtgaagcaact
gtttcagattcagatttggatgttataattggggtctcagatagctctgcgctggaggaa
agggatccccctgattctctgctatgtgatctacgcccttatcaaaagcaggcccttcat
tggatgctgcagcttgagaaaggtagttcttcccagaatgcagctacaacccttcaccct
tgttgggaagcatacaaactcgaggacaagagggagctagttttgtacttgaatgtattc
tcaggcgatgctacaactgaatttcctagtacactacaactttcaagaggagggattctg
gcagatgcaatgggactggggaagactattatgacaatagctcttcttctttctgattct
agcaaaggatgcatcacaactcagaatactactcacatctttggagaagccagtgggttg
ggtgaatcgcaagatgctgtgaagaagcttgctagccctttctcttttagcaggcacaag
acagtcaaggccccacttattgaaggtggcaatctaattatctgcccgatgacactaata
agtcagtggaaggcagagattgaagctcatactaagccaggtgctgtgaatatatacgtt
cactatggacaaaacaggccaaaggatgcaagctttataggtcagagtaatattgtcctg
actacatatggtgttgtgtcatcagaattttcaatggatggctcaacggaacatggggct
ttgtactcggtacattggttcagagttgtgcttgatgaagcacacatgataaaatcttct
aaaagtttgatatccttagcagcggcagctctgactgctgatcggcgctggtgtctcact
ggtacaccaattcagaacaacttggaggatttatatagccttttccggtttctgagagtt
gaaccatggaggaactgggctttgtggaataaacttgtacaaaaaccatacgaagaaggt
gatgaaagaggcttaaagctagtgcagtccattttgaagccaattatgttgagaaggact
aaaaatagtacagacaatgagggcagaccaattcttaatttaccccctgcaaatattgaa
gtaaaatattgtgatttgtcagaagctgagaaggatttctatgaagctctatttagaaga
tctaaggtaaaatttgatcaatttgtggagcaaggaaaggttctgcacaactatgcttca
atcctggagttacttttgcgccttcgtcaatgctgtgaccacccattccttgttatgagt
cgtggtgatacacaggagtttgcagacctaaacaagcttgcaaagcgattcctgcgtagt
ggtaatggtcctgttaatggggattcttcttgccttccctctagagcttacattgaagag
gttgttcaagaactgcaaaaaggtgaaggggagtgtcctatttgcctggaagcctttgag
gatgccgtattaactccttgtgcacactgtttatgccgagagtgtctattatctagttgg
cggagtgcaacaacaggtctttgccctgtctgtagaaaatcgatgagcaagcaagatctt
ataactgctccaactgatagccgctttcaaattgatgttgataaaaactgggttgaatct
tccaagatatctgctctcctgcaggagttggaagttcttcgcagttctggtgccaagagt
atcgtatttagccagtggactgcatttttagatctgttgcaaattccactttcaaggaat
aacttctcatttgctaggctggatgggacgctgaatcttcagcaaagagagaaagtaatc
aaggagttctctgaggacagaggcattttggttctgcttatgtctctgaaggctggtggt
gttggtatcaaccttactgctgcatctagtgcgtttgtcatggacccttggtggaatcct
gctgttgaggaacaagctgtcatgcgcatccatcgaattggtcagacaaagactgtttct
atcaaaagattcattgtgaagggcactgtcgaggaacgaatggaagccgtgcaggcgcgt
aagcaacggatgatttctggagccttaacagatcaagaagtccgcacggcacgtatagaa
gaactgaagatgcttttctcttga

DBGET integrated database retrieval system