Panicum virgatum (switchgrass): 120703429
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Entry
120703429 CDS
T07260
Name
(RefSeq) autophagy-related protein 2-like isoform X1
KO
K17906
autophagy-related protein 2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
120703429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120703429
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120703429
Membrane trafficking [BR:
pvir04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
120703429
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
120703429
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG2_CAD
Motif
Other DBs
NCBI-GeneID:
120703429
NCBI-ProteinID:
XP_039843445
LinkDB
All DBs
Position
4K:complement(19971894..19982482)
Genome browser
AA seq
1906 aa
AA seq
DB search
MMGFLEGLRLDTLLKRVCKSLLKKRLGDLILGDLDLDQFDIQLGRGRVQLNDLALNAEFI
NRKLSGSPIMLKEGSIKSLIVRFTGSCEIVVEDLELVLAPSVASEVADVHTECSVSGSPS
DTHTSVMTERYESDSNQCSTSVSRDVDEGVKRIANAVKWFLTSFNIKLKNVYVVFDPQTS
LDSMLPENNRSLVLRIKELEFGTQLGLFKLNNFLTFHEAVIEILKMDDVDALLQNDPFRG
IADISSRHSITSVLAGPIGGFSGKLNLSIPWNKGCLNFEKIDADVSVDSLELRLQISSTR
WIMNVWDSLQRKKVDEQSCAHNAADISISSSRSAFCSPASSTLKSSSDSVIANSECLVHS
TFSQSRQGKIQESFLTRAHVITDWMEPAARADQGDPDSDCDESIDQFFECFEELRNSQSS
LGNSGIWDWTCSVFNAISFASTLASGSDQVPKEPVIEKTLRASITEVSVLLLFSDDMDVN
SSSVPISELDDMRNSQMFSSCLSSEQFEKSVISPATASSLNMHHLEAKCQNIHLDLQTYP
KNLRFKASVAQMKLNEYYRAGNDSSDDSYLGYHFLNNKLRQGVQASLPQCLFAAGDHLVE
TYELCSNSSSELTKVELLKTFGECTFHYDVNTKDQDGKLVSSTSMSICLAPLVLWVHFHT
LYMMLSFINKVESDLSHEEHRAHMHGDDKGSRLTTSTNVSSGGSLKIHISLSPARIILCF
PTEFSWDLRHPSILDKFLVIDHTSCLNMAETASHPQNEIHNEFHLGKLCTSIHLATGNFD
IYLVKPANDVLDGRVCSSNRKTFSTMKIFSVTGTSYNDSGITLIRRKYPVISPEMVSKAW
SLAKLHDQLVTKKQNSKWAGISPSITQDLEETGSSMRQELLKSSELLFHVQLSCVSVQLS
KKDCELLTKLIDHILDGISNEETSTSGNCKDKSVPTNDICIQTSVIFECSTLEICTELDE
TVEVSPLLQAELEGSWNSLKLKVSNFSLFSFSNVGGFNSASFLWVNHGEGELWGSVGVKD
DEAPGESKDFLIVVCKDSACRRGDGEGTNVLSIGTAGCSVTHIRNPKLKENYTSVGVRSG
TIVAPGGRMDWINAICLLFSSGSDGTGKSDDSSTVNSSHSGEFYLSSFFLELADVAVSYE
PHFKYFTLDAEAADCKFFSCLLAASSFKLHNKSASASAATVFDIQLRDLGVLLSESSGSK
NITCGYGVDYLRQAGYAKVAQNTLIEASLRIDSSFWKLEILDSQFDIGTCHDTTYGLIHL
GSQLQQIYGPDMRDALDHLQSRWNSVQQANKQNIAADASDKSEISLEILTDSGDYQSDGL
LDDIIDNAFYTEDYMANNFCESNCCETDDGFELNTQIPQRQNSCADQIIDSYYMPELHQL
SSYEEQCTSGGDALRTLENEDGGWYNNVPLTIVENHVSKKKSKQGEQILQQEVKASFCVP
DTDESCNLKGKVLIHDIDVKWRMYAGGDWLPQKDSTSLTCTEGRDRSSSLEFTLTGLSIQ
LDMYPDGDISISKLSVAAQDLSLCDQSIHAPWKLVLGCYDSKDYPRESCSSIFRFELESV
RPEPHAPLEDYRLHLEILPLQLHLDQGQLNFLINFFQNDSCNNDPHLHCEKEIVDVKSTS
YGSNTVVDEALLPFFQKFDVKPLVLHINYIPRQFDPIALGKGNYAELLNILPWKGIDLKL
KHVSAMGVYGWNSICDTVAAEWLEDVSKNQVHKLLKGLPPIRSLVAVSSGTKKLVSLPIK
SYKKDRKLLKGMQRGAVAFIRSVSIEAVGLGVHLAAGAHDMLVKTERALTAVPPSLASCE
AKRTKHNIRANQPESAQQGIKQAYESLTDGFGRTASALIANPIKVYNRAGPGSALATAIC
GAPAAAVAPVSASARAVHCALVGLRNSLDPEHKKESMYKYNGPSQL
NT seq
5721 nt
NT seq
+upstream
nt +downstream
nt
atgatgggattcctggaagggctacgcctcgacacgctgctgaagcgcgtctgcaagtcg
ctgctgaaaaagcggctcggggatctgatcctcggcgacctcgacctcgaccagttcgac
atccaactcggccgcggcagggtgcagctcaacgacctagccctaaacgccgagttcata
aaccggaagttgtcaggatctcctattatgctgaaagaaggatcgataaaatccttgata
gttagattcactggtagttgtgagattgttgtggaagatttggagcttgtgcttgctcca
tctgttgcaagtgaagttgctgatgtacatactgaatgctctgtctctggtagtcctagt
gacacacacacatcagtcatgaccgaaagatatgaatctgatagtaatcagtgttctact
tctgtatctcgagatgtggatgaaggtgtcaagagaatcgccaatgccgtcaaatggttt
ctaacaagttttaatatcaagttaaagaatgtatatgttgtatttgatcctcaaaccagt
ttggatagtatgctcccagaaaataatcgatctctggttttgcgaattaaagagttggaa
tttggaacccaacttggtctgtttaaactgaacaactttttaactttccatgaggcggtc
attgagattttgaagatggatgatgtcgatgcactgcttcaaaatgatccatttagagga
atagctgacatttcatcacgtcatagtattacttcagtcttggcaggccccattggtgga
ttctcagggaaactcaacttaagcataccatggaataaggggtgcttgaactttgagaaa
attgacgcagatgtatctgttgattcattggaattacggttacaaatcagcagtacccgg
tggatcatgaatgtatgggattctctccaaaggaagaaagtagacgaacagagttgtgca
cataatgctgcagatatctctataagctcttccaggtctgccttttgttcacccgcgtca
agcacattgaaatcaagttcagattctgtgatagccaacagtgaatgcttggtgcatagc
acattttctcaaagcaggcaaggtaaaattcaggaatctttccttacaagggcacatgta
ataacagattggatggagcctgctgcccgtgcggatcaaggcgatcctgattcagattgt
gatgaaagcattgatcaattctttgaatgttttgaggaattgaggaactctcagtctagt
ttagggaacagtggtatatgggactggacttgttcagtattcaatgccataagttttgca
tcaactttagcatctggatctgatcaagttcctaaagaaccagtgatcgagaagacccta
cgagcctccattactgaggtatctgttcttcttttgttcagtgatgacatggatgtcaac
agttccagtgttcctatcagtgaattggatgatatgagaaattctcaaatgttttcgagc
tgcctttcatctgagcagtttgagaaatcagttatatctcctgctactgcttccagctta
aatatgcatcatctcgaagccaaatgtcagaatattcatcttgacctacagacatatcca
aaaaatttaaggttcaaggcatcagttgcccaaatgaagcttaatgaatactaccgtgct
ggaaacgatagttcagatgattcataccttggttaccacttcttgaataataaattgcgg
caaggagttcaagcttccctccctcagtgcctgtttgctgctggagatcatttagtggaa
acctatgaactttgtagcaacagttcaagtgaactgactaaagttgaattgttgaaaact
tttggcgagtgcacattccattatgatgtcaataccaaagatcaagatggcaaattagta
agctcaacttctatgtcgatctgtttggctcctttggttttatgggtgcacttccataca
ctgtacatgatgttgagttttattaataaagttgagtctgatttgtcacacgaagagcat
agagctcatatgcatggtgatgataaaggaagcagattgactaccagcacaaatgtgtcc
tcaggtggaagtctaaagattcatatatccctgtcacctgcaagaatcatcctttgcttt
ccaactgagttttcgtgggatttaaggcacccatccatccttgataagttcctggtgatt
gaccacacttcatgtctgaacatggcagaaactgcatctcatccacaaaatgaaattcat
aatgagtttcatcttggcaagctatgtacctcaatccatttggctacagggaactttgac
atttatttggttaaacctgccaatgatgtattggatggtagagtctgttcttcaaatagg
aaaactttctctacaatgaagattttttctgttactggaaccagttataatgactctggc
atcacacttatcaggagaaagtatcctgtaattagccctgagatggtgagcaaagcatgg
agtttggcaaagctgcatgatcaattggttactaaaaaacagaacagcaaatgggctggc
atttccccttctataacacaagatcttgaggagacaggatctagcatgcgccaggagctc
cttaagagcagtgagctcttatttcatgttcaactttcttgtgtctcagtacaacttagt
aaaaaggattgcgagctattaactaagttgatagatcatatccttgatgggatatcaaat
gaagaaacaagcacatctggaaattgcaaggacaaatctgttccaaccaatgatatttgc
attcaaacatctgtcatctttgagtgcagcaccttggaaatttgcactgaattggatgaa
acagtggaagttagtcctttgttacaggcagaactagaaggatcctggaattctctaaag
ttgaaagtttcaaatttttctcttttctccttttcgaatgttggtgggttcaacagtgcc
agttttctttgggtgaatcatggtgaaggggagctttggggttctgttggtgttaaggat
gatgaagccccaggagaaagcaaagattttcttatagtggtttgcaaggactccgcctgc
aggcgtggtgacggtgaaggtactaatgtgttgtctattggcactgctggctgttctgtg
acccacatcaggaacccaaagctaaaagagaactacacttctgttggtgttcgttctggt
acaattgtggcacctggaggccgtatggattggatcaatgcgatatgcctgctgttcagt
tcaggttcagatggaactggaaagtcagatgatagtagcacagtaaatagttctcattct
ggtgaattctatctatcatctttctttcttgagctggctgatgttgctgttagctatgaa
cctcacttcaaatatttcactcttgatgctgaagcagcagactgcaagttcttctcatgc
cttttagctgcatcatcatttaaacttcataataaatcagcatcagcctctgcagctact
gtttttgatatccagttacgtgatcttggggttcttctttcggaatcatctggctcaaaa
aatatcacttgtggttatggtgtagattaccttcgtcaagcaggatatgctaaggttgcc
caaaacacattaattgaagcttctctaagaatcgattcatcgttttggaaacttgaaata
ttggattcccaatttgatattggtacttgtcatgatacaacttatggtctgattcatttg
ggctcccaactccagcagatatatggtccagatatgcgggatgctctagatcatctacaa
tctaggtggaatagtgtccaacaagcaaacaagcaaaatatagctgctgatgcatcagac
aaatctgagatcagtttggagattttgacagattctggagattaccagtcagatgggctg
cttgatgatatcattgataatgctttttacacagaggactacatggccaacaatttttgc
gagagcaattgctgtgagacggatgatgggtttgaattgaatactcaaataccacagaga
caaaactcctgtgcagatcaaatcattgactcgtattatatgcctgaacttcatcaattg
tcatcatatgaagagcaatgtacatctggtggggatgctcttagaaccctggagaatgaa
gatgggggatggtataacaatgttcccttaacaatagttgagaaccatgtttcgaaaaag
aaaagcaaacaaggagaacaaatacttcaacaagaagtgaaggcatctttttgtgtcccg
gatactgatgaatcttgtaatcttaaaggaaaggttcttattcatgatatagatgtcaag
tggcggatgtatgctggaggtgactggttacctcagaaagattcaactagcctcacatgc
acagagggcagagataggagctcttctttggagtttaccctgacagggctcagtatccaa
cttgacatgtatccagatggggatatttctatatctaagctatccgttgctgctcaggac
ttgagtctttgtgatcaaagtatccatgctccctggaaactggttcttggatgttacgac
tcaaaggattacccaagagaatcttgctccagtatattcaggtttgaactggagtctgta
aggcccgaaccacatgctcctttggaagactacaggcttcatctcgagattttacctctg
cagctgcatcttgatcaagggcaacttaacttcctaatcaatttcttccagaatgattca
tgtaacaatgaccctcatttgcattgcgaaaaagagattgttgatgtgaaaagcacgagc
tatggaagcaatacagttgtggatgaggcattacttcctttctttcagaaatttgatgta
aagccgcttgttctgcacattaattatatacctcggcagtttgatcccattgcactaggc
aaaggaaattatgcagaacttctcaacattcttccgtggaagggaattgatttgaagctc
aagcatgtttcagcaatgggtgtttacggatggaacagcatatgtgatacagtagctgca
gaatggttggaggacgtttctaaaaaccaggttcacaaattgttaaaagggcttcctcca
ataagatcactagttgctgtcagttcagggactaagaagttggtatctttgcccatcaaa
agctacaagaaagaccggaagttgctcaagggaatgcaaagaggtgcagttgcttttata
aggagtgtttccattgaagcagtagggcttggtgtccatttggctgcgggagctcatgat
atgcttgtgaagacagagcgtgctcttacagctgttccaccatctttagcctcatgtgaa
gcaaaacgaacaaaacacaacataagagctaaccagcctgaaagtgcacaacaagggata
aaacaggcctatgaaagtttaactgatggatttggaaggactgcctctgctttgatcgcc
aatcctattaaagtttataaccgggctggtcctggatcagccctggctactgcaatttgt
ggagcaccagctgctgcagtagctccagtatcggcatctgcgcgtgctgtccattgtgca
cttgttgggcttaggaacagtcttgatcctgagcacaagaaagaatccatgtacaaatac
aatggaccttcgcaattgtag
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integrated database retrieval system
