Panicum virgatum (switchgrass): 120703444
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Entry
120703444 CDS
T07260
Name
(RefSeq) transcription initiation factor TFIID subunit 6-like
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120703444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120703444
03036 Chromosome and associated proteins [BR:
pvir03036
]
120703444
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120703444
Coactivators
SAGA/TFTC/STAGA complex
120703444
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
120703444
STAGA complex
120703444
TFTC complex
120703444
SAGA complex
120703444
SLIK complex
120703444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
TFIID-31kDa
Motif
Other DBs
NCBI-GeneID:
120703444
NCBI-ProteinID:
XP_039843476
LinkDB
All DBs
Position
4K:complement(20391624..20396867)
Genome browser
AA seq
540 aa
AA seq
DB search
MSIVPKETIEVIAQSVGIPSLGADVAAALAPDVEYRLREIMQESIKCMRHAKRTVLTADD
VDSALSLRNVEPVYGFASGDPLRFKRAVGHKDLFYLDDREVDFKEIIEAPLPKAPLDTAV
VAHWLAIEGVQPAIPENPPIDAIIPPAENKRSEHGKDDGLAVDVKLPVKHVLSRELQMYF
DKIAELTMSRSDTPLFKEALVSLAKDSGLHPLVPYFSYFIADEVTRSLGDLPVLFALMRV
VRSLLHNPHIHIEPYLHQLMPSMITCIVAKRLGHRLSDNHWELRDFSANLVALVCRRFGH
VYHNLQNRLTKTLIHAFLDPAKSLTQHYGAVQGISALGPSAIRLLLLPNLVTYMQLLEPE
LQLEKQKNEMKRKEAWRVYGALLCAAGKCLYDRLKLFPVLLSPSTRPLLRSDKRVLTNNP
NKQKSSTDLSASQPPLKKMAPDTSVNSMAGNMQGAMDGFSTQLGNPGMMQASSSGQMVES
IPSAAIRRDQGSDLAQRVSTVLRQAWKEDQDAGHLLGSLYEVFGEAIFSFVQPPEISLFV
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcgtgccgaaggagacaatcgaggtcatcgcccagagcgtcggcatccctagc
cttggcgccgatgtcgccgccgccctcgcccccgacgttgagtaccgcctccgcgagatc
atgcaggagtccattaaatgtatgcgccatgcaaaacggacagttctgactgcagatgat
gttgacagtgctctcagccttaggaatgttgagcctgtatatggattcgcttctggtgat
ccattgcggtttaagcgagctgttggacataaggatctcttttatcttgatgaccgggag
gtagacttcaaagagattattgaagctcctctgccaaaggcccctcttgacacagcagtt
gtagcccattggctagcgattgagggtgtgcagcctgcaattccggagaatcctcctatc
gatgcaattataccaccagctgaaaataaaaggtcagaacatgggaaggatgatgggctt
gcggttgatgttaagcttcctgttaaacatgtattatctagagaactacagatgtacttt
gataaaatagctgagcttactatgagtagatctgatacgcccctttttaaagaagcttta
gtgagcttggcaaaagattcaggccttcatccattggttccttacttttcctacttcatc
gcagatgaggttacccggagtttgggggatcttcctgttttatttgctctcatgcgagta
gtccgaagtcttctccataatccacacattcatattgaaccttatttgcaccagttgatg
ccatcaatgattacgtgcattgttgcaaaaaggctagggcataggctctctgataaccac
tgggaacttagagacttttctgccaatttggttgctttggtatgccggaggtttggtcat
gtctatcacaaccttcaaaaccgattaacaaaaacattaatccatgcgtttcttgatcct
gcgaaatcattgacccaacattatggtgctgttcaagggatatctgcgttggggcccagt
gcgattaggctgctgcttttgcccaacctcgtgacatatatgcaacttctggagccagaa
ctgcagcttgagaagcagaaaaatgagatgaaaaggaaggaagcctggcgtgtttatggt
gccttgctgtgtgctgcaggcaaatgcttgtacgatcggctcaaattatttcctgttttg
ctttctccatcgacacgtcctcttttgaggagcgataaaagggttttaaccaataaccca
aataagcagaaatccagcacagatctctctgcatcccagccacctctgaagaagatggca
ccggacacttcagtcaactccatggcaggaaacatgcaaggagccatggatggcttttcc
actcagttgggtaaccctgggatgatgcaggcttcgtcctctggacagatggtggagagc
atcccatcagctgcgatccggagagatcagggcagcgatcttgcacagagagtgtccacg
gtgctgaggcaagcttggaaggaggatcaggatgccggtcatctcctggggtcactgtat
gaggtcttcggtgaagccatcttctcgtttgtccaaccaccagagatatccttgtttgtg
tag
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