Panicum virgatum (switchgrass): 120703479
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Entry
120703479 CDS
T07260
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120703479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120703479
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120703479
Spliceosome [BR:
pvir03041
]
Complex C
Other components
Step II factors
120703479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
AAA_22
S1
Helicase_C
AAA_19
AAA_16
nSTAND3
TsaE
ABC_tran
PhoH
DUF6623
GIPC1_GH2
Sigma54_activ_2
AAA_30
AAA_33
T2SSE
Helicase_RecD
AAA_7
Motif
Other DBs
NCBI-GeneID:
120703479
NCBI-ProteinID:
XP_039843515
LinkDB
All DBs
Position
4K:22717376..22720811
Genome browser
AA seq
712 aa
AA seq
DB search
MRRLTQLSLVSKVCSELEAHLGVADRVLAEFVVDLGRASASAVDFEATLRDHGAELPGYL
VRSLHAVITAIPDHAPAAQNPTTSRVAGTGRREDDKEANSDEEPELYQVRRGRVTRVADA
GCFVRIDGARGREGLVHVSQMPGRRVSATRGQEVFVKVVSVDGTKLRLSMRDVDQDTGRD
LLPFRRRDDAPRTHPPADRDTAAGKRKGISGIFVPDEDEVGPAPRRPTRRMSSPERWEMK
QLIASGVLDAKDYPGSDEGDDRMLYQEEAEEELEIELNEDEPAFLKGKGRSTADLSPVRI
SKNPEGSMSRAAALQSALVKERRDIRTQEQRGMVDAILKDLNRSWEDPMSGGRYLMQELI
GTGLAAQSVPEWKVSYGKAGTYGQRSRLSVQEQRESLPIFRLKKELINAVHDNQVLVVIG
ETGSGKTTQVTQYLAEAGYTTMGKIACTQPRRVAAESIAKRVAEEFGCRLGEEVGYSIRF
DDRTGPGTVIKYMTDGMLLREILVDGDLSSYSVVMLDEAHERTIYTDILFSLLKQLVRRR
SDFKLIVTSATLDAEKFSGYFFDCKIFTIPGRTFPVEILHTKQPESDYMDAALITVLQIH
LTEPEGDILLFLTGQEEIEHACERPHERMKTFGEDVPELIICPVYSALPTEVQSKIFEPA
PPGKRKVVVATNIAEASITIDGIYYVVDPGFAKLNIYNPKLGLDSLVITPIS
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgcggcgtctcacgcagctctcgcttgtctcgaaggtctgctcggagctcgaggcccac
ctgggcgtcgccgaccgcgtcctcgccgagttcgtcgtcgacctcggccgtgcctccgcc
tccgccgtcgacttcgaggccacgctcagggatcacggcgccgagctcccgggctacctc
gtccgctccctccacgccgtcatcaccgccatccccgaccacgcccccgccgcccaaaat
cccaccacctctcgtgtcgccggtacggggagacgcgaggacgacaaggaggcgaatagt
gatgaggagccggagctgtaccaggtgcgccgcgggagggtcacccgcgtggcggacgcc
gggtgcttcgtccgcatcgacggcgcgcgcggccgcgaggggcttgtgcacgtctcccag
atgcccgggcgccgcgtatctgccacgcgcggccaggaggtgttcgtcaaggtcgtctcg
gtggacggcaccaagcttaggttgtcgatgcgagacgtcgatcaggatacggggagggat
ctcctcccgttccgtcggcgtgacgatgcgccgaggacccatccaccggccgatcgcgac
acagccgctgggaagaggaaggggatttcggggattttcgttcctgatgaggatgaggtg
ggccctgcgccacgcaggccaactaggcggatgagctcgccagagaggtgggagatgaag
cagctgattgcgtcgggagtgttggatgccaaggactacccggggtctgacgagggtgac
gataggatgctttaccaggaggaagctgaggaggagctggagattgagctcaatgaggat
gagcccgcgttcttgaagggaaaggggcggtccactgctgacttgtctccagtgaggatt
tccaagaatcctgaggggtcgatgagccgtgctgcagcactgcagtctgcacttgttaag
gagaggcgtgatatccgcacccaggagcaaagaggaatggttgatgcaatacttaaggac
cttaatcggtcgtgggaggaccccatgtcaggtgggcggtatctgatgcaggagctgata
ggcactggactagcagcacagagtgtgccagaatggaaggtgtcatatgggaaagctgga
acatatgggcagaggtcgaggctttcggttcaagagcaaagagagagccttccgatattc
aggctcaagaaggagctgattaatgctgttcatgacaaccaagttttggtggttatcggt
gagactggctctgggaaaacaactcaggttacacaataccttgctgaggcagggtatact
acaatgggtaaaattgcatgtactcagcctcgcagggttgctgcagagtcaattgcaaag
cgtgtagctgaggagtttggctgtcgattaggagaagaagtaggttattcaattcgcttt
gacgaccgcactggacctggaactgttatcaagtatatgacagacggtatgctcctacga
gagattttggtggatggagatttgtcatcttattcagtggttatgcttgatgaggcacat
gagagaactatctacacagatattctcttcagcttgctaaagcagctagttagacggaga
agtgatttcaagttaatagtcacttcagccactcttgatgctgagaagttctctggctat
ttttttgattgcaaaattttcacaattcctggaagaacttttccggtagagatactgcat
acgaaacagccagagagtgactacatggatgctgcactgatcacggtattacagattcat
ctgactgaacctgaaggagatattctcttgttcctgactggccaagaagagattgaacat
gcttgcgagcgtccccatgagaggatgaagacatttggtgaggacgtaccagagctgata
atttgtcctgtgtacagtgctcttcctactgaagttcagtcaaagatcttcgagcctgct
cctcctggtaagaggaaggtggtcgtggccaccaacattgcggaagcatcaattaccata
gatgggatttattatgttgttgacccaggctttgcaaagcttaatatctataacccaaaa
ctagggctggattcactggttatcactccaatctcttag
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