KEGG   Panicum virgatum (switchgrass): 120703701
Entry
120703701         CDS       T07260                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120703701
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120703701
   03041 Spliceosome [BR:pvir03041]
    120703701
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     120703701
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     120703701
Spliceosome [BR:pvir03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    120703701
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_PARP14_3 Nup35_RRM_2 RRM_Nup35 eIF-3c_N Calcipressin
Other DBs
NCBI-GeneID: 120703701
NCBI-ProteinID: XP_039843789
LinkDB
Position
4K:35053780..35058553
AA seq 407 aa
MAGYGEENQDGMNGYEEEEEEEEEEEEVEEVYEEEEEEGDGEADDGAAVAAEPAEMRSEG
GGRGLAEVVGDADAGGEEGRDADSGGGDASGKIFVGGVAWETTEETFTMHFQKYGAITDS
VIMKDKHTKMPRGFGFITFSDPSVIDRVLEDEHVIDGRTVEVKRTVPKEEMSTKDGPKTK
KIFVGGIPPSLTEDKLKEHFSSYGKVVEHQIMLDHSTGRSRGFGFVTFESEDAVERVMSQ
GRMHDLGGKQVEIKKAEPKKPGGGDSSSNGRYSRGGGGHRDSYRGSGGGGGGSGSSGGGG
YGYGGGYRSAAAYYGSTAYGAYGRGYGYGNTAGYGSGYGSVYGGSMYGGPYGAYGAYGGA
YGGGAYGAPGGYGGAGGYGGYGGAGGMGGGGGGSTGGRGSRYHPYGK
NT seq 1224 nt   +upstreamnt  +downstreamnt
atggcggggtacggggaggagaaccaggacggcatgaacgggtacgaggaggaggaggaa
gaggaagaggaagaggaagaggtggaggaggtctacgaggaagaggaggaggaaggggac
ggggaggcggacgacggggctgcggtggcggcggagcctgctgagatgagaagcgagggt
ggaggtcgaggcctagcggaggtcgttggggatgctgacgccggtggcgaggaagggagg
gatgcggattctgggggcggcgacgcctcggggaagattttcgtagggggtgtagcctgg
gagaccaccgaagaaacgttcactatgcattttcagaagtatggtgcaataactgattcc
gttatcatgaaggacaagcatacgaagatgcctcgtggatttggatttatcacattttct
gatccatctgtgattgatagggttctagaggatgaacatgtcatagatggaagaacggtt
gaagtcaaaaggactgttccaaaagaggagatgtcaacaaaagatggtcctaagacaaaa
aagatctttgtgggtggtatcccgccatctcttactgaagataaattgaaggagcacttc
tcctcatatgggaaggtggttgagcatcagattatgcttgaccatagcactgggcgatca
cgaggctttggatttgtcacgtttgaaagtgaagatgctgttgaaagggttatgtcacag
gggagaatgcacgatcttggagggaaacaggtcgaaataaagaaagctgagccaaagaaa
cctggcgggggtgattcaagctcaaatgggagatacagtcgtgggggtggtggtcaccgt
gattcttaccgtggtagtggcggcggcggcggcggctctgggagcagtggtggtggtggc
tatggatatggaggtggctaccgatcagctgcagcctattatggcagcacagcttatggt
gcatatggcagaggatatggatacggcaatactgctggctatgggtctggttatggctca
gtttatggtggttccatgtatggtggtccatatggtgcatacggggcatatggtggtgcc
tatggaggtggtgcatatggtgcaccaggaggctatggaggtgcaggaggatatggtgga
tacggtggggctggaggcatgggtggtggtggtggtggtagcactggcggtcggggctcg
aggtaccacccttatggaaaatga

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