KEGG   Panicum virgatum (switchgrass): 120703765
Entry
120703765         CDS       T07260                                 
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03082  ATP-dependent chromatin remodeling
pvir03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    120703765
   03083 Polycomb repressive complex
    120703765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pvir03036]
    120703765
Enzymes [BR:pvir01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     120703765
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     120703765
   HDAC complexes
    Sin3A-HDAC complex
     120703765
    BRAF-HDAC complex
     120703765
    REST complex
     120703765
    SHIP complex
     120703765
    MiDAC complex
     120703765
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     120703765
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    120703765
  Chromatin remodeling factors
   NuRD complex
    120703765
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 120703765
NCBI-ProteinID: XP_039843868
LinkDB
Position
4K:complement(36510600..36515681)
AA seq 518 aa
MDASAGGGGNSLPTTGADGSKRRVCYFYDAEVGNYYYGQGHPMKPHRIRMTHALLGRYGL
LDQMQVLRPHPARDRDLCRFHADDYVAFLRSVTPETQQDQIRALKRFNVGEDCPVFDGLY
SFCQTYAGGSVGGAVKLNHGHDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKYHQ
RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDVGHSKGKYYSLNVPL
DDGIDDESYQSLFKPIMGKVMEVFNPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRFM
RSFNVPLLLLGGGGYTIRNVARCWCYETGVALGHELTDKMPANEYYEYFGPDYTLHVAPS
NMENKNTRHQLDDIRSKLLDNLSKLRHSPSVQFQERPPETELPEQDEDKENPDERRDADS
DVEMNDAKPLEDSGRRSSIQGVRMKKEPSETEATDLDVNSVAAEHSRGSVPVADGVGSSK
QTLPNDTSPMAIDEPGAPKVETEISNKLQDQPTMNQKP
NT seq 1557 nt   +upstreamnt  +downstreamnt
atggacgcgtcggccggcggcggcgggaactccctgccgaccaccggcgcggacggctcg
aagcgccgcgtctgctacttctacgacgcggaggtgggcaactactactacgggcagggc
cacccgatgaagccgcaccgcatccgcatgacccacgcgctgctcggccgctacggcctc
ctcgaccagatgcaggtgctccgcccccaccccgcccgcgaccgcgacctctgccgcttc
cacgccgacgactacgtcgccttcctccgctccgtcacccccgagacgcagcaggaccag
atccgcgcgctcaagcggttcaacgtcggcgaggactgccccgtcttcgacgggctctac
agcttctgccagacctacgcggggggatccgttgggggcgccgtcaagctcaaccacggc
cacgacatcgccatcaactgggccggcgggctccaccacgccaagaagtgcgaggcctcc
ggcttctgctatgtcaatgacatcgtcctcgccatcctcgagctcctcaagtaccaccag
cgcgttctgtacgtcgatattgatatccaccacggggacggcgtggaggaggcattttac
accacggacagggtgatgacggtctcgttccacaagtttggggattatttccctgggaca
ggggacattcgtgacgttggacactcaaaggggaagtactactcactgaatgtcccgttg
gatgatggtattgatgacgagagctaccagtcattgttcaagccgataatgggcaaggtg
atggaggtcttcaaccctggtgccgtcgtgcttcagtgcggtgccgattccttgtcgggt
gataggttgggctgtttcaacctatctattaaggggcatgcggaatgtgtgagattcatg
aggtccttcaatgtcccgctgttgctgcttggtggtggtggatataccataagaaatgtt
gcacgatgttggtgctatgagacaggagttgccctgggtcatgagctcactgacaagatg
cccgctaatgagtattatgagtattttggtccagattacactctacatgttgctccaagt
aacatggagaacaaaaacacacgacatcaattggatgatataagatcaaaacttcttgat
aatctatcaaaactccgacattctcctagtgtccaatttcaagagcgacctccagagact
gagttacctgagcaagatgaagataaagagaaccctgatgaaagacgcgatgctgattct
gatgtggaaatgaatgatgccaagcctcttgaggactctggaaggagaagcagcatacaa
ggtgtaagaatgaagaaagaaccttctgagacagaggcaactgatctggatgttaatagt
gtagctgcagaacattcaagaggcagtgtacctgtggctgatggagttggttcctcaaaa
caaacactgcctaatgatacaagtccaatggccatagacgaaccaggtgctccgaaagtt
gaaacagagatctcaaacaaattgcaggaccaaccaacgatgaaccagaaaccatga

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