Panicum virgatum (switchgrass): 120703800
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Entry
120703800 CDS
T07260
Name
(RefSeq) coatomer subunit beta'-2-like isoform X1
KO
K17302
coatomer subunit beta'
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120703800
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120703800
Membrane trafficking [BR:
pvir04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
120703800
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
120703800
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
Beta-prop_THOC3
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WDR55
WD40_Gbeta
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_WDR41
DSE1_N
Beta-prop_SCAP
ASA1
CFAP251_N
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_HPS5
Beta-prop_IFT140_1st
PEP5_VPS11_N
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_NOL10_N
Beta-prop_Aladin
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_ACSF4
Beta-prop_WDR75_2nd
Beta-prop_WDR35_TULP_N
TPR_1
TPR_2
TPR_8
CFAP70_TPR_C
Clathrin
Motif
Other DBs
NCBI-GeneID:
120703800
NCBI-ProteinID:
XP_039843903
LinkDB
All DBs
Position
4K:36967193..36978836
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AA seq
907 aa
AA seq
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MPLRLDIKRKLAQRSERVKSVDLHPTEPWIMSSLYSGSVCIWNYQTQTMVKSFEVSELPV
RSAKFIPRKQWVVAGADDMFIRVYNYNTMDKVKMFEAHTDYIRCVAVHPTLPYVLSSSDD
MLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTVKIWSLGSPDPNFT
LDGHSKGVNCIDYFTGGDRPYLITGSDDQTAKVWDYQTKSCVQTLEGHAHNVSAVCFHPE
LPIIMTGSEDGTVRLWHSTTYRLENTLNYGLERVWALGYMKGSRRVVIGYDEGTIMIKIG
REEPVASMDSSGKIIWAKHNEIQTVNIKAVGADTEIADGERLPLAVKELGSCDLYPQSLR
HNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEIVWSTDGEYAVRESPSKIKIYSKNFQ
ERKSIRPAFSAERIHGGVLLAMCTNDFICFYDWAECRLIRRIDVNVKNVYWADSGDLVTI
ASDSSFYILKYNRDLVSSHLDGGASVGEEGVEDAYELLHEINERVRTGLWVGDCFIYNNS
SWRLNYCVGGEVTTMFHLDRPMYLLGYLSNQSRVYLIDKEFNVVGYTLLLSLIEYKTLVM
RGDLERANTILPSIPKEQHNSVAHFLESRGMLEEALDIATDPNYRFDLAVQLGSLEIAKE
IAAEARSESKWKQLGELAMSTGKLEMAEECLLQATDLSGLLLLYSSFGDAEGITKLASMA
KDLGKNNVAFLCLFMLGKLEECLQLLVDSNRIPEAALMARSYLPSKVSDIVSIWKKDLQK
VNSKAAESLADPAEYPNLFEDRQIALSVESTLAPKRGVYPPAEEYMTYAERPNESLVEAF
KSMNMEEEIPNENGDPAHEVIEDDGVEESQEDAVEVEPDGSIDSGVLVNGNDGEEHWGMN
NEVTSSA
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgccgctccggttagatatcaagaggaagctcgcgcagaggtcggagagggtcaagtcc
gtcgacttgcatccaaccgaaccatggatcatgtcaagcctttattctggcagtgtctgc
atctggaactaccagacgcagacaatggtgaaatcttttgaagtcagcgagttaccagtt
cgttcggctaaatttattccacgaaagcaatgggttgtggctggtgcggatgacatgttc
atccgtgtgtataactataatactatggataaggtgaagatgtttgaagctcacactgat
tacattaggtgtgtggctgttcacccgaccctgccttatgtgttgtcatcgtcagatgac
atgctcataaagctctgggactgggataagggctggatgtgtactcaaatctttgagggc
cactctcactatgtcatgcaagtcacatttaaccccaaggatacaaatactttcgccagt
gcttcccttgatcgtactgtaaagatctggagtcttggctcccctgatcctaacttcaca
ttggatggtcattcaaaaggtgtaaattgtatagattacttcactggtggtgaccgtcca
tatctaattaccggctctgatgaccaaactgcgaaggtttgggattatcaaacaaagagc
tgtgttcaaacacttgaaggacatgcccataatgtctctgctgtttgtttccatcccgag
cttccaataataatgacaggttcagaggatggaactgttcgtctatggcactcaactacc
tacaggcttgagaatacacttaactatggccttgaacgagtgtgggcattaggttacatg
aagggttcacggagagttgtgattggatatgacgaaggaacaataatgataaagattggc
cgtgaagaacctgttgctagcatggatagcagtggtaaaatcatatgggccaagcataat
gaaattcaaactgttaatatcaaggcagttggcgcggacactgagatcgcagatggagaa
cgtctaccattggctgtaaaggagctgggaagttgtgatctttacccacaaagtttaaga
cacaatccaaatgggaggtttgttgttgtatgtggagatggagagtacattatctacaca
gcgctagcatggagaaatagatcctttgggtctgctcttgaaattgtctggtcaactgat
ggagagtatgctgtaagggaaagcccatcaaaaataaagatctacagtaaaaactttcag
gagaggaaaagtataagaccagcattctctgccgaacgtatacatggtggagtattgctt
gcaatgtgtacgaatgacttcatttgtttctatgactgggcagagtgcaggttgatacgt
cgaattgatgtgaatgtaaaaaatgtatattgggctgacagtggtgatttggtaacaata
gcaagcgattcatcattctacattttgaagtacaatagggatctagtttcttctcatcta
gatggaggggcatcagttggtgaggaaggtgtggaagatgcctatgaattgcttcatgag
ataaatgaacgtgtccgtactgggttatgggttggagattgtttcatatacaataattct
tcatggcggctaaattactgtgttggaggagaggttactacaatgtttcacttggaccgg
cctatgtatttattaggatatctctctaaccaaagtcgtgtatatcttatcgacaaggag
ttcaatgtggtgggttatactttactactcagtttgattgagtacaaaacactcgtgatg
cgtggggatttggaacgtgcaaataccattttaccatctattccaaaggaacaacacaac
agtgtggcacattttcttgaatcacgtggcatgttggaggaagcccttgatatagcgact
gaccctaattacagatttgacctggctgtgcagcttggcagcctggaaattgcaaaggaa
attgctgctgaggcacgtagtgaatcaaagtggaagcagctgggtgaacttgctatgtcc
actggaaagcttgagatggcagaagaatgtctgcttcaagctacagaccttagtgggtta
ttgcttctgtattcatcatttggagatgctgaagggataacaaaactggcgtccatggct
aaagatctaggaaagaacaacgttgctttcctttgcttgtttatgctaggcaaattggaa
gaatgccttcaattgttggttgatagcaaccgtattcctgaagcagcattgatggcacga
tcatatcttccaagcaaagtttctgatattgtttcaatatggaaaaaggaccttcaaaag
gtgaactccaaagctgcagaatctctggcagatcctgccgagtacccaaacctgttcgag
gaccggcagattgctctcagtgtagaatctactcttgctcccaagaggggtgtctatcca
cctgctgaggagtacatgacatatgcggagaggcccaatgagagccttgtggaagctttc
aaaagtatgaatatggaagaagagataccaaatgagaatggagatcctgctcatgaggtc
attgaggatgatggagtcgaggaaagtcaggaggatgccgttgaagttgaacccgatggc
tcaatagatagtggtgttcttgtgaatgggaatgatggtgaggaacactggggtatgaac
aatgaagtaacttcatcagcatga
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