Panicum virgatum (switchgrass): 120703976
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Entry
120703976 CDS
T07260
Name
(RefSeq) tryptophan synthase beta chain 2-like isoform X1
KO
K06001
tryptophan synthase beta chain [EC:
4.2.1.20
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00260
Glycine, serine and threonine metabolism
pvir00400
Phenylalanine, tyrosine and tryptophan biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
pvir01230
Biosynthesis of amino acids
Module
pvir_M00023
Tryptophan biosynthesis, chorismate => tryptophan
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
120703976
00400 Phenylalanine, tyrosine and tryptophan biosynthesis
120703976
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.20 tryptophan synthase
120703976
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Gene cluster
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Motif
Pfam:
PALP
Motif
Other DBs
NCBI-GeneID:
120703976
NCBI-ProteinID:
XP_039844141
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Position
4K:complement(39778245..39781025)
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AA seq
494 aa
AA seq
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MAAATLRPALPQAGPEQRASLLCAPKHRVAAGGRTRSPSFAARASLKSSGARASIPKQWY
NLVADLPVKPPPQLHPQTHQPLVPSDLSPLFPDELIRQELTEERFVDIPEEVIDVYELWR
PTPLIRAKRLEKLLGTPAKIYYKYEGTSPAGSHKANTAVPQAWYNAAAGVRSVVTETGAG
QWGSALSFASSLFGLNCEVWQVRASFDQKPYRRLMMETWGATVHPSPSEATAAGRAILAA
DPSSPGSLGMAISEAVEVAATSADTKYCLGSVLNHVLLHQTVIGEECLEQLAALGEAPPD
VVIGCTGGGSNFGGLAFPFIREKLAGRMSPEFRAVEPAACPTLTKGVYAYDFGDTAGLTP
LMKMHTLGHGFVPDPIHAGGLRYHGMAPLISHVYELGFMEAIAIQQTECFQAALQFARTE
GIIPAPEPTHAIAAAIREALECKKTGEEKIILMAMCGHGHFDLASYEMYLRGDMVDLSHP
AEKLEASLAAVPKI
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgccacccttcgccctgccctgccccaagcagggccggagcagagagcttca
ctgctctgcgcgcccaagcacagggtcgccgccggtgggaggactagaagcccgagcttt
gccgcgagggccagtctgaagagctcgggtgccagggcgagcatccccaagcaatggtac
aacctcgtcgccgacctgccggtgaagccgccgccgcagctgcacccgcagacgcaccag
cctctagttcccagcgacctgtcgcccctcttccccgacgagctcatccggcaggagctc
accgaggagcggttcgtcgatattcccgaggaggtcatcgacgtctacgagctctggcgc
ccgacgccgctcatcagggccaagaggctggagaagctgctgggcacgccggcgaagatc
tactacaagtacgaggggacgagcccggcggggtcgcacaaggccaacaccgccgtgccg
caggcgtggtacaacgccgccgccggggtgaggagcgtggtgacggagaccggcgccggc
cagtggggcagcgcgctctccttcgccagcagcctcttcgggctcaactgcgaggtgtgg
caggtgcgcgcgtccttcgaccagaagccgtaccggcggctgatgatggagacgtggggc
gccacggtgcacccgtcgccatcggaggcgacggcggccgggagggcgatcctggcggcg
gacccgtccagcccgggcagcctggggatggccatctcggaggcggtggaggtggcggcc
accagcgccgacaccaagtactgcctgggcagcgtgctcaaccacgtcctgctccaccag
accgtcatcggcgaggagtgcctggagcagctggcggcgctcggcgaggcgccgccggac
gtcgtcatcggctgcaccggcggcgggtccaacttcggcgggctcgcgttccccttcatc
cgcgagaagctcgccggcaggatgagcccggagttccgggccgtggagccagcggcgtgc
cccacgctcaccaagggcgtctacgcctacgacttcggcgacacggccgggctcacgccg
ctcatgaagatgcacacgctcggccacggcttcgtccccgaccccatccacgcaggtggg
cttcgctaccatggcatggcgcctctgatctcgcacgtgtacgagctcggattcatggag
gccatcgccatacagcagaccgaatgcttccaagcggcgttgcaattcgcccggacggag
ggcatcatcccggcgccggagccgacgcacgcgatcgcggcggcgatccgggaggcgctg
gagtgcaagaagaccggcgaggagaagatcatcctgatggccatgtgcggccacggccac
ttcgacctcgcctcgtacgagatgtacctgaggggcgacatggtcgacctgtcgcacccg
gcggaaaagctggaggcgtcactcgccgccgtgcccaaaatctga
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