Panicum virgatum (switchgrass): 120704035
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Entry
120704035 CDS
T07260
Name
(RefSeq) formamidopyrimidine-DNA glycosylase-like isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120704035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120704035
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
120704035
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
120704035
DNA repair and recombination proteins [BR:
pvir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
120704035
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
Fpg-like_C
Wtap
Motif
Other DBs
NCBI-GeneID:
120704035
NCBI-ProteinID:
XP_039844213
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All DBs
Position
4K:complement(40492778..40496083)
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AA seq
399 aa
AA seq
DB search
MPELPEVEAARRALQAHCVGRRIARCAVADDAKVVVAPAGRAAFERAMVGRTIVAARRKG
KNLWLQLDAPPFPSFQFGMAGAIYIKGVPVTNYKRSVVNAEEEWPSKYSKFFAELDDGLE
FSFTDKRRFARVRLFEDPETVPPISELGPDALFEPMSVDNFLDSLGRKKIGIKALLLDQS
FISGIGNWIADEVLYQSRIHPLQIASNLSREGCEALHRSIQEVVKYAVEVDADLERFPKE
WLFHHRWGKKPGTVNGKKIEFITAGGRTTAYVPQLQKLTGAQSSKMVATNLEQLAENGDA
KDPETDGEDADMLKPKKRATTSRAARGQQNKDSLGASARKARGNGGCSKKTGTNAEAVAP
KMAVTKSNGEQDLDEPSSNAVNNSDQVIRRSSRKVKPRK
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctgccggaggtggaggcggcgcggcgggcgctgcaggcgcactgcgtgggg
aggcgcatcgcgcgctgcgccgtggcggacgacgccaaggtggtcgtcgcgcccgccggc
cgcgcggccttcgagcgcgccatggtcggccggaccatcgtcgccgcgcgccggaagggg
aaaaacctctggctgcagctcgacgcgccgcccttcccgtccttccagttcgggatggca
ggtgcgatatatataaagggcgttcctgttacaaattataagagatcggttgtcaatgct
gaagaggagtggccctccaaatactctaaattctttgctgagcttgatgatggcttggag
ttttccttcactgataaaaggcgctttgcaagagttcgtttgtttgaagatcctgaaact
gtacccccaatttccgagctaggtccagatgctctctttgagccaatgtctgttgacaat
tttttggattccctgggtagaaagaagatcggaataaaagcccttttacttgatcagagc
tttatatcaggcattggtaattggattgcggatgaagtgctttaccagtcaaggatccat
ccattacagattgcttcaaatctatctagagagggttgtgaagcactgcaccgaagtata
caagaggttgtgaaatatgctgttgaagttgatgctgaccttgagcgctttccaaaggaa
tggttatttcatcaccggtggggcaagaagcctggtacagtcaatggaaagaagattgaa
ttcataacagctggtggcaggacaacagcctatgtgccacaattgcaaaaattgactgga
gcccaatccagcaaaatggtagccactaaccttgagcaactggctgagaacggtgatgcc
aaggatccagagactgatggagaagacgctgatatgttgaagccaaaaaagcgagctaca
acctccagggctgccaggggacagcaaaacaaagatagcttaggtgccagtgccagaaaa
gcaaggggaaatggtggttgcagtaaaaaaacaggtaccaacgctgaggctgtggcgccg
aaaatggctgtcaccaagagcaacggtgagcaagatttggacgaacccagcagcaatgca
gtcaataactcagatcaggttattagaagatcatcgaggaaagttaaaccccgtaagtag
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