KEGG   Panicum virgatum (switchgrass): 120704048
Entry
120704048         CDS       T07260                                 
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog
  KO
K14554  U3 small nucleolar RNA-associated protein 21
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    120704048
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pvir03009]
    120704048
Ribosome biogenesis [BR:pvir03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    120704048
SSDB
Motif
Pfam: Utp21 WD40_Prp19 WD40_WDHD1_1st WD40 WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 ANAPC4_WD40 EIF3I Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_HPS5 Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_VPS8 Beta-prop_WDR75_2nd Beta-prop_SCAP PEP5_VPS11_N WD40_RFWD3 VPS8_N Utp12 RasGEF
Other DBs
NCBI-GeneID: 120704048
NCBI-ProteinID: XP_039844231
LinkDB
Position
4K:40756198..40765053
AA seq 905 aa
MGIFEPFRAIGYITAGGVPFSVQRLGSETFVTVSVGKAFHVYNCAKLNLVLAGPQLPKKI
RALASYKDYTFAAYGSDIAVFKRTDQVVTWSRHEEKVNMLYLFGEYVLSADVKGNIFIWA
FKGAEPNSEPVGSISLGDKFTPSCIMHPDTYLNKIIVGSEEGPLQLWNISTKKKLYDFNG
WDSPVRCCVSSPALDVVAVGCSDGTVHVHNIRYDEELMSFNHQIRGAVTALSFRTDGQPL
LASGGSSGVISIWNLEKKRLHSVIREAHDGSIVSLHFFANEPVLMSSAADNSIKMWIFDN
NDGDARLLRFRSGHSAPPRCIRFYGNGKCILSAGQDRAFRLFSVVQDQQSRELSQRHVTK
RAKRLRVKEEEIKLKPVITFDCAEIRARDWCNVVTCHMDTPQAYVWRLQNFVIGEHILTP
SSGTETPIKACVISACGNFTILGTEGGWIEKFNLQSGISRGSYIDTSLARQCAHDGEVVG
LACDATNGSLISAGYHGDIKVWDFKTCKLKSRLDVGKSVTKIAYHRANGILATVVDDMVL
ILFDTVAMKMVRRFEGHTDRITDLCFSEDGKWLISSSMDGTLRIWDISLARQIDAMHVDI
SITSLSMSPNMDVLATTHVDQNGVYLWVNQSLFSTSTNIENYASGKHVRNVCLPAVSSAE
RSEEEQARDSGDSNQSNIKPFVILDHQIPNLITLSLLPRSQWQSLTNLDIIKVRNKPIEP
PKKPEKAPFFLPSVPSLSGEILFEPPASNKETDSSTTENTNHKKMAELSSQFSHLLQSCG
ETKNYSAFTDYMKGLSPASLDMELRLLQIIDDEESEDLEQRPELQSISSLLDYFIHELSC
RNNFEFVQAILKLFLKIHGETIRRHSTLQSKVKKLLEVQSLVWQKIDKMFQGARCMVTFL
SNSQF
NT seq 2718 nt   +upstreamnt  +downstreamnt
atggggatcttcgagcccttccgggcgatcgggtacatcacggcgggcggcgtgcccttc
tccgtgcagcgcctcggcagcgagacattcgtcaccgtcagcgtcggcaaggccttccac
gtctacaactgtgctaagctgaatttggttctagctggaccccaacttcccaagaagata
cgtgctctagcatcctacaaggattatacctttgctgcatatggaagtgatattgcagtt
tttaagaggactgatcaggtggttacttggagtagacatgaagaaaaggtcaacatgcta
tacctgtttggagaatatgttcttagtgcagatgttaaaggtaatatattcatttgggcc
ttcaaaggagcagagccaaacagtgagccggttggaagcatatcattgggagacaagttt
accccatcctgtatcatgcatcctgatacttatctaaataagataattgttggtagcgaa
gaaggccccttgcagctttggaatatcagcacaaagaaaaaactatatgatttcaacggt
tgggactcaccagttcgctgttgtgtttcctcacctgctttagatgtagttgctgttgga
tgctctgatgggacagttcatgttcataatatacgatatgatgaagaattgatgtctttc
aaccatcaaattcgtggtgctgtgactgcactgtcatttcgaacagatgggcaaccactt
cttgcctctggaggttcttctggcgttattagcatatggaatcttgagaagaaacgtctg
cattcagtgattagggaggcccatgatggctctattgtttcgcttcatttctttgccaat
gaacctgttctgatgagctcagctgctgataattcaattaaaatgtggatattcgataat
aatgatggagatgctcgtctgttacggtttcgaagtggtcacagtgctccacctagatgc
ataagattctatggcaatggaaaatgcatcttatctgccggtcaagatcgtgcctttcgt
cttttctcagttgtccaggatcaacaaagtagagaactttctcagcggcatgtcacaaaa
agagcaaagaggcttagagtaaaggaggaagagatcaagctaaaaccagttattacattt
gactgtgctgagatacgtgcacgtgactggtgtaatgttgttacgtgccacatggatact
ccacaggcatatgtatggcgtcttcagaactttgttattggtgaacatattctaacacca
tcatcaggcactgagacaccgatcaaggcctgtgtgataagtgcatgtggtaattttact
atcttgggcactgaaggtggttggatcgaaaaatttaaccttcaatcagggattagtcgt
ggtagttacatcgacacttcattggcaaggcaatgtgcacatgatggagaagttgttggg
ttagcttgcgatgctacaaatggctctctgattagtgctggataccatggtgatattaag
gtgtgggattttaaaacatgcaagctaaaatccagactggatgttggtaaatctgtcact
aaaatcgcataccaccgggcaaatggtattcttgcaaccgtagtagatgatatggtacta
atattgtttgatacggtggccatgaaaatggttcgtagatttgaaggacatacagaccga
atcactgatttgtgcttcagtgaagatggaaaatggctcatctcatctagtatggatggg
actcttaggatatgggacatcagtttagcgaggcagatagatgcgatgcatgttgacata
tctataacgtctctgtctatgtctcctaacatggatgtgttggctaccacacatgttgat
caaaatggcgtctacctctgggttaatcaatctttgttctcgacctcaacaaatattgaa
aattatgcaagtgggaaacatgtccggaatgtatgtttgccagctgtttcatcagcagaa
agatctgaggaagagcaagctcgtgattcaggagactcaaatcagtcaaatattaaacct
tttgtcatattggatcatcaaataccaaatctgatcaccctttccttgcttccaaggagt
caatggcaaagtttgacaaatcttgatattataaaggttcggaataaaccaattgagccg
cctaagaaacctgagaaggcacctttcttcttaccctctgttccatccctttctggggag
atattgtttgagccccctgccagcaataaagaaacagacagcagtaccactgagaacaca
aaccataagaagatggctgaactctcctctcaattcagtcatcttttacaatcttgtgga
gaaacaaagaactattcggcttttactgactacatgaaaggcctgtcgcccgcatcttta
gacatggaactacgactactacagataatagatgatgaagagtcagaagatctggagcag
agacctgagcttcagtctatttcatctctgttggattatttcattcatgagctttcctgc
aggaataactttgagtttgtccaggctattcttaaattatttctgaagatacatggtgaa
acaatacggcgacactcaactcttcagagcaaagtaaagaagctccttgaggtccagagc
ttagtttggcagaagatcgacaagatgtttcagggtgcacgatgcatggttacattcctc
agcaattcacagttttag

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