Panicum virgatum (switchgrass): 120704099
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Entry
120704099 CDS
T07260
Name
(RefSeq) RING-H2 finger protein ATL78-like
KO
K19040
E3 ubiquitin-protein ligase ATL10/75/76/77/78 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120704099
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120704099
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
ATL proteins
120704099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-rbx1
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
zf-RING_UBOX
SLX1_C
zf_RING_Vps8_fungal
zf-RING_16
zf-RING_4
Prok-RING_1
zf-C3H2C3
Motif
Other DBs
NCBI-GeneID:
120704099
NCBI-ProteinID:
XP_039844284
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All DBs
Position
1K:34803152..34804298
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AA seq
313 aa
AA seq
DB search
MVTLMAKKKKTICSFTPNLTAACNLAAYIYRFQFSTAETYSYILAYFRVTEVPAFVECRQ
EKRIEFDQLGRKSWRQREVSRVEVIEAGMQEGYVFSRRALLLRIYGENAAASQVVAGHGQ
EAAPPAADGAGNSFDANVVMILAVLLFALICALGLNSIVRCALRCSTRMPAPGGSRRRQQ
AAAGEPGLPVARLAQAGARRKALRAMPTLVYSAGLLPLQAAGGGGGPVCAICLGELEPGE
RVRVLPKCNHGFHVRCVDRWLLARSTCPTCRQPLFAALPKGSGPADAGAGAEPPVRAFLM
PLRPEGFVTPYDF
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atggtgacactcatggcaaagaaaaaaaaaactatatgcagcttcacaccaaatcttact
gctgcctgcaatcttgctgcctatatataccgcttccagttcagcacggcagaaacttac
tcttacattcttgcatatttcagagttacagaagtgcctgcctttgtagagtgtagacaa
gagaaacggatcgaattcgatcaactgggaaggaagagttggcgtcagagagaggtatca
cgagtggaggtgatcgaagcaggcatgcaagaagggtacgtgttctcgaggagggcgttg
ctgctgcgcatctacggggagaatgccgccgcgagccaggtggtggccgggcacgggcag
gaagcagctcctccggcggccgacggcgccggcaacagcttcgacgcgaacgtggtcatg
atcctggccgtgctcctgttcgcgctcatctgcgcgctggggctcaactccattgtgcgg
tgcgcgctccggtgctcgacccggatgccggcgcccggcggctcgcggcggcggcagcag
gcggccgcgggggagccggggctgccggtggcgcggctggcgcaggcgggcgcgcggcgg
aaggcgctgcgcgcgatgccgacgctggtgtactcggcggggctgctgccgctgcaggcg
gccggcggcggcggcgggcccgtgtgcgccatctgcctgggcgagctggagcccggggag
cgcgtccgcgtgctgcccaagtgcaaccacggcttccacgtccgctgcgtcgaccggtgg
ctgctggcgcggtccacatgcccgacgtgccggcagccgctgttcgccgcgctgcccaag
ggctctggccccgccgacgccggcgccggcgccgagccgccggtgcgggcgttcctcatg
ccgctccgcccggaaggtttcgtcacgccgtacgatttttag
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