Panicum virgatum (switchgrass): 120704145
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Entry
120704145 CDS
T07260
Name
(RefSeq) WD repeat domain-containing protein 83-like
KO
K13124
mitogen-activated protein kinase organizer 1
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120704145
Spliceosome [BR:
pvir03041
]
Complex C
Other components
Complex C specific factors
120704145
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
EIF3I
WD40_CDC20-Fz
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_EML
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_RFWD3
WDR90_beta-prop_4th
ANAPC4_WD40
WD40_MABP1-WDR62_1st
WD40_like
NBCH_WD40
Beta-prop_NWD2_C
Beta-prop_Vps41
Beta-prop_NUP159_NUP214
Mala_s_1-like
Beta-prop_Nup120_160
Beta-prop_NOL10_N
PQQ_2
VID27
PPPI_inhib
Motif
Other DBs
NCBI-GeneID:
120704145
NCBI-ProteinID:
XP_039844360
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All DBs
Position
1K:34923851..34929891
Genome browser
AA seq
303 aa
AA seq
DB search
MSSSETVAQHLPRTEARSLSGHEGAVLAVRFNRDGNYCLSCGKDRTLRLWNPHTGANVKT
YKSHAREVRDVHSSSDNAKLVSCGADRQIFYWDVASGRVIRKFRGHNSEVNSVKFNEYNA
VVVSAGYDRTVRAFDCRSQSSDPIQTIDTFQDSVMSVNLTKTEIIAGSVDGTVRTFDIRM
GRETVDNLGHPVNCISLSNDNNCLLANCLDSTVRLLDKSSGELLQEYKGHACKSFKMDCC
LTNDDAFVVGGSEDGYVFFWELVDAPVVARFRAHSSVVTSISYHPTKACMLTSSVDGSIR
VWT
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcctcggagacggtcgcacaacatctgccgcggacggaggcacggtcattgtcg
gggcacgaaggggcagtgcttgcggtgcgcttcaaccgcgacggcaactactgcctgagc
tgcggcaaggaccgcacccttcgcctttggaacccgcacactggcgccaacgtcaagacc
tacaaatcccacgcccgcgaggtccgcgacgtccactcctcctcggataacgcgaagctg
gtgtcctgcggcgccgacaggcagattttctactgggatgttgcctcgggccgcgtcatc
cgcaagttccgtggtcacaacagcgaggtcaattcagtgaagtttaatgagtacaatgct
gttgtagtctcagctggttatgaccgtacagtgcgtgcatttgactgcaggtcacaaagc
agtgatccaattcagactattgatacttttcaagatagtgtaatgtcagttaacctaaca
aagacagaaataattgcgggcagtgttgacggtactgttcgtacatttgacattcgcatg
ggtagggagactgtggataatctggggcatcctgtgaactgtatatcattatcaaatgac
aacaattgccttttagctaactgtctagattctaccgtgaggcttctagacaagtcatca
ggagaactgttgcaggagtacaaggggcatgcgtgcaagtcctttaagatggattgctgc
ttgacgaatgatgacgcatttgttgttggtggatctgaggatggctatgttttcttctgg
gagttagtggatgcacctgttgttgcaagattcagggcacatagttctgtggtaaccagc
atcagttaccacccaacaaaggcgtgcatgttgacatcttctgtggacggttcaatacgt
gtttggacctaa
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