Panicum virgatum (switchgrass): 120704221
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Entry
120704221 CDS
T07260
Name
(RefSeq) zinc finger CCCH domain-containing protein 45
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120704221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120704221
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120704221
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120704221
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120704221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
zf-CCCH_4
zf-CCCH_3
TFIIA
Motif
Other DBs
NCBI-GeneID:
120704221
NCBI-ProteinID:
XP_039844462
LinkDB
All DBs
Position
4K:43928254..43934855
Genome browser
AA seq
641 aa
AA seq
DB search
MEDGDGGLSFDFEGGLDSAPAVGGPVPSSADPGVGGGGGGDGPGMHGRGRGRGSYRQTVC
RHWLRGLCMKGDACGFLHQFDKARMPVCRFFRDFGECREPDCAYKHSYDDVKECNMYKMG
FCPNGPNCRYKHVKLPGPPPPVEEVLQKILQMRSFNRYGPNRNNNYNQQGERPQHPQGSG
LPNQNAAENATATAPPTGGQQAPMANQQPPQQQHKPNTNDQVQGASNGNQTTRIATPLPQ
GPSRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESTENVILIFSINRTRHFQGC
AKMTSRIGGYIGGGNWKSAHGTAHYGRNFSMQWLKLCELSFQKTHHLRNPYNDNLPVKIS
RDCQELEPFIGEQLASLLYLEPDSELTAMLIAAEAKREEEKAKGVSADEAADNQDIVLFD
DNEEEEEEESEEEEEGNGQESQGRGRGRGMMWPPQMPMMRGPMMGGRFPPNMIGDGFGFG
GGFGMPDPFGMPRGFPPFGGPRFPVDFARGPMPGMAFPGRPPQPFPLGLDMMMGPGRGPM
MGGMGMGGPGRPNRPMGMAPFMPPPPPNNRLSKREQRRPGGDRGDRFETASDQGSRGHEN
TGNSGAEAARSQSGDRYGRNTLRDDDSESEEEAAPRRSRKR
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggaagacggcgacggcggcctgagcttcgacttcgagggcggcctcgactccgccccg
gcggtcgggggccccgtgccgtcctccgcggaccctggcgtgggcggcggcggaggcggc
gatggtccgggcatgcacggccgcggccgcggccgcgggagctaccgccagacggtgtgc
cggcactggctgcgcgggctctgcatgaagggcgacgcgtgcgggttcctgcaccagttc
gacaaggcccgcatgcccgtctgccgcttcttccgggacttcggcgagtgccgcgagccc
gactgcgcctataagcactcttacgacgacgtcaaggagtgcaacatgtacaagatgggg
ttttgtcccaatggccctaattgccggtacaaacatgtcaagctacctgggccaccgcct
cctgttgaggaagttctacagaagattttgcagatgcgctctttcaacagatacggtccg
aatagaaacaataactataatcagcagggtgagagacctcaacatccacagggttctggg
ttgcctaaccaaaatgcggcagaaaatgctactgctacggctccaccaactggtggacaa
caagcaccaatggcgaatcaacagcctccacagcagcagcacaagccgaatacaaatgac
caggtccaaggtgcttcaaatggcaatcaaactactagaatcgcaacaccgcttccacaa
gggccatctaggtacttcattgttaaaagttgcaatcgagagaatctggaaatatcagtt
cagcagggaatttgggccactcagaggagtaatgaagctaaacttaatgaagcgtttgaa
tccactgagaatgttattttaatattctcaatcaatagaactcgccatttccaggggtgt
gcaaagatgacttctagaattggtggctacattggtggcggaaattggaaatctgctcat
ggaacagcacattatggtcggaacttctctatgcagtggcttaagctctgtgaactatca
tttcagaaaactcatcatctccgcaatccatacaatgataatctcccagttaagatcagc
agagattgccaggaactagaacctttcattggtgagcagttggcttccctgctttatcta
gaaccagacagtgaacttacggctatgctaattgcagcagaggctaagagagaagaggaa
aaggcaaagggagtcagtgctgacgaggcagctgataatcaagatatcgtgctgtttgat
gacaatgaagaagaggaggaagaggaaagtgaggaggaggaagaaggcaatggccaagag
tctcaagggaggggaagaggaagagggatgatgtggccacctcaaatgccaatgatgcgt
gggccaatgatgggagggcgttttcctcccaacatgattggcgacggctttggttttggt
ggcggctttggcatgcccgatcctttcggcatgccgcgtggtttcccgccctttggcggc
ccaaggttccctgttgactttgctagaggccctatgcctggtatggccttcccgggcagg
cctccgcagcctttccccctaggccttgacatgatgatgggccccggccgtggcccgatg
atgggaggcatgggaatgggcgggcctggacggcctaaccgccccatgggtatggcgcct
ttcatgccccctccacctccgaacaaccgcctcagcaagcgggagcagagaaggccgggt
ggcgaccgtggtgataggttcgagacggcatcagatcaggggagcagaggccacgagaac
actgggaactccggagctgaggcagccagatcgcagtccggtgacaggtacggcagaaac
accctccgggacgatgacagtgagagcgaagaggaagcagccccaaggcggtcaaggaaa
cggtag
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integrated database retrieval system
