Panicum virgatum (switchgrass): 120704412
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Entry
120704412 CDS
T07260
Name
(RefSeq) zinc finger CCCH domain-containing protein 46-like
KO
K14321
nucleoporin-like protein 2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120704412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120704412
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120704412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf-CCCH_4
zf_CCCH_4
zf-CCCH_2
zf-CCCH_DUS3L
Torus
zf-CCCH_PARP12
zf-CCCH_PAN3
Motif
Other DBs
NCBI-GeneID:
120704412
NCBI-ProteinID:
XP_039844720
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Position
4K:46080724..46084813
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AA seq
401 aa
AA seq
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MNRRQELCRNFQRGSCKYGAQCRFVHASSQQQQQQQQAKPNPFGFGSASRPQQQQSFGSQ
FQQQQQQQQQKPNPFGFGVQSGQSRNAPGPAKPFQNKWVRDPSAPTKQPEAAQAPAAAHT
SCTDPESCRQQIAEDFKNETPLWKLTCYAHLRSGPCDIKGDISFEELRAKAYEESRQGHP
LQSIIEGERNLQNAKLMEFTNFLNNPRVSVSQTPSFPTVASFPEVKNNSSFGVPQTNGPP
VFSSFSQVGSANNFGPGPRTAPGVPTNSLFGQSSQASHPAFAAPTFGRSDMKFGVSGSFG
SQTSQLPSGSLQGSSMSSVGNFPKPPARYPQSASSNHHRDIDRQSQDLLSGIIAPTSAIN
QAPVEENKNENQDDSIWLKEKWSIGEIPLGEPPQRHISHVF
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgaaccggcggcaggagctctgcaggaacttccagcgcggcagctgcaaatacggagcg
cagtgcagattcgtgcacgcgtcctctcagcagcagcaacagcagcagcaggcgaagccc
aacccgtttgggttcggctcggcgagcaggccgcagcagcagcagtcgttcggttcgcag
tttcagcagcagcagcagcagcaacagcagaagcccaaccctttcggattcggggtgcaa
agtgggcagtcccgaaacgctcctggcccggctaagccatttcaaaataagtgggtaagg
gacccttcagctccaacgaagcaaccggaagcggcgcaggcaccagcagcagcccacaca
tcctgtacagatcctgagtcctgcagacaacagattgctgaggattttaagaatgaaact
ccactctggaagcttacatgttatgctcacctcagaagtggcccttgtgacatcaagggg
gatatcagcttcgaggagctgagagctaaagcatatgaggaaagccgacaagggcatcct
ctgcagtcaataatcgagggtgagaggaatctgcaaaatgcaaagttgatggagtttact
aatttcctgaacaatccacgtgtatcagtatcacaaactccaagctttccaactgtggct
tctttccctgaagtgaagaataactcgtcttttggggttcctcaaactaatggaccacca
gtgtttagtagtttcagtcaagttggatcagcaaataactttggacctgggcccagaact
gcaccaggagtcccaaccaatagtctctttggtcagtctagccaggcaagccatccagca
tttgctgcacctacttttggccgttctgatatgaaatttggagtttcaggttcatttgga
agtcagacatcacaactgccatctggtagtttgcaaggctcaagcatgtccagtgttggc
aatttcccaaagcctcctgcacgctacccacagtctgcttcctctaaccatcacagagac
attgataggcagtcacaagatttacttagtgggatcatagctcctacaagtgccataaac
caagctcctgttgaggagaataaaaatgaaaatcaggatgatagtatctggttgaaggaa
aaatggtcaattggagagattccgttgggcgaaccgccacagaggcacatcagtcatgtg
ttttag
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