Panicum virgatum (switchgrass): 120704454
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Entry
120704454 CDS
T07260
Name
(RefSeq) pre-mRNA-splicing factor syf2-like
KO
K12868
pre-mRNA-splicing factor SYF2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120704454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120704454
Spliceosome [BR:
pvir03041
]
Complex B
Other components
Prp19-related factors
120704454
Complex C
120704454
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SYF2
Vanabin-2
SoxA-TsdA_cyt-c
Motif
Other DBs
NCBI-GeneID:
120704454
NCBI-ProteinID:
XP_039844784
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All DBs
Position
4K:46465855..46468441
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AA seq
346 aa
AA seq
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MGMEGAVAGPSVDGKSRPECINSSNPYHECSDYCLRKIAEARQRLDDELPDSRPPEQRTV
HPDCINAPNPYHECSEYCFKRIADAKSGLERGEQEPPATGAGTSDAAEQQPDDNDAEKQE
DAGADDGYPQMTEKQKKLFDLRLKMNEARKANQQVMVAEKKRMEPRGESRGVSKQKWLED
RKKKIGKLLDSNGLDMSKAYMLDTQETAEAKYKKWEKEPAPYGWDVFNQKTLYDAYKKRT
KNIDVDMDAYNKAKEADPEFYRDASSLQYGKVSKVPEENINKMVKELKEREEKRKSFSRR
RKFNEDKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atggggatggagggcgccgtggcggggccgtcggtggacgggaagtcgcggccggagtgc
atcaactcgtccaacccgtaccacgagtgctccgactactgcctccgcaagatcgccgag
gccaggcagcgcctcgacgacgagctgcccgactcgcgcccgcccgagcagcgtaccgtc
cacccggactgcatcaacgcccccaacccgtaccacgagtgctccgagtactgcttcaag
cgcatcgccgacgccaaatcagggttggagcgtggggagcaagaaccgcctgccactggt
gctggcacgtctgacgccgcagagcagcaacctgatgataatgatgctgagaagcaggag
gacgctggtgccgatgatggttacccgcagatgacagaaaagcagaagaagctgttcgat
ctgcgccttaaaatgaacgaagcaaggaaagcgaaccagcaggtgatggttgctgagaag
aagaggatggagcctcgtggtgagagtcgaggtgtttctaagcagaagtggctggaggac
agaaagaagaagattggaaagttgctcgactcaaatggccttgatatgtcgaaggcttac
atgcttgatacacaggagacagcagaagcgaagtacaagaaatgggagaaggaacctgca
ccttatgggtgggatgttttcaatcagaagaccctgtatgatgcatacaaaaagaggacc
aagaacatagatgttgacatggatgcgtataataaagcaaaggaagctgatcctgaattc
taccgcgatgcctctagtctccagtatgggaaggtgtcaaaggtcccagaagaaaacatc
aacaaaatggtcaaagagctcaaggagcgcgaagagaagcggaaatccttcagcaggagg
cgcaagttcaacgaagacaaggacatcgactcgatcaacgaccggaatgagcactttaac
aagaagatcgagcgggcctttggcaagtacacgcttgagatcaagaacaacttggaaaga
gggactgccttgcctgactaa
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