Panicum virgatum (switchgrass): 120704564
Help
Entry
120704564 CDS
T07260
Name
(RefSeq) phytoene synthase 1, chloroplastic
KO
K02291
15-cis-phytoene synthase [EC:
2.5.1.32
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00906
Carotenoid biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
120704564
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pvir01006
]
120704564
Enzymes [BR:
pvir01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.32 15-cis-phytoene synthase
120704564
Prenyltransferases [BR:
pvir01006
]
Terpene biosynthesis
Squalene/phytoene synthase
120704564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-GeneID:
120704564
NCBI-ProteinID:
XP_039844939
LinkDB
All DBs
Position
4K:complement(47633570..47636987)
Genome browser
AA seq
417 aa
AA seq
DB search
MAIILVRAASPGLSDGAVGHHQVHGSLQGSSQLLKTRVPPRRWMLCSLRYACLGLQPGEE
VGRTSAVYSSLAVNPAGEAVVSSEQKVYDVVLKQAALLKRQLRTPPVLDVRPQQLDMPRS
GLKEAYARCGEICQEYAKTFYLGTMLMTEERRRAIWAIYVWCRRTDELVDGPNANYITPT
ALDRWEKRLEDLFAGRPYDMLDAALSDTISRFPIDIQPFRDMIEGMRSDLRKARYKNFDE
LYMYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGIANQLTNILRDVGEDARRG
RVYLPQDELAQAGLSDEDIFYGVVTNRWRNFMKQQIKRARMFFEEAERGVTELSQASRWP
VWASLLLYRQILDEIEANDYNNFTRRAYVGKGKKLLALPVAYGKSLLLPVSLRNSQT
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggccatcatccttgtacgggcagcgtcgcccgggctctccgacggcgccgtcggccac
caccaagtccatgggagcctccagggctcctcccagctgctcaagacgagggtgccgcca
cgccgctggatgctctgctcgctcaggtacgcgtgcctcggcctccagccgggggaggag
gttggccggacctccgccgtgtactccagcctggccgtcaacccggcgggagaggccgtc
gtctcgtccgagcagaaggtctacgacgtcgtgctcaagcaggcggcattgctcaagcgc
cagctgcgcacgccccccgtccttgacgtcaggccccagcagctggacatgccgcgcagc
ggcctcaaggaggcctacgcccgctgcggcgagatctgccaggagtatgccaagactttt
tacctcggaactatgttgatgacagaggagcggcgccgcgccatatgggccatctatgtg
tggtgtaggaggacagatgagctcgtagatgggccaaacgccaactacattacgccaaca
gctttggaccggtgggagaaaagacttgaggatcttttcgcgggacgcccttacgatatg
cttgacgccgctctttctgataccatctcaaggttccccatagatattcagcccttcagg
gacatgattgaagggatgcggagtgatctcagaaaggcgaggtataagaacttcgacgag
ctctacatgtactgctactatgttgcaggaactgtgggattaatgagtgtgcctgtgatg
ggcatcgcacctgagtctaaggcaacaactgaaagcgtgtacagtgctgccttggctctc
ggaattgcgaaccagctcacaaatatactccgggatgtaggagaggatgctagaagagga
agggtatatttaccacaagatgaactggcacaggcagggctctctgatgaggatatcttc
tatggtgttgtgacaaaccgatggagaaatttcatgaagcagcagatcaagagggccagg
atgttttttgaggaggcagagagaggggtgactgagctctcacaggctagcagatggcca
gtatgggcctccctactgttgtaccggcaaatcctggatgagattgaagcaaacgactac
aacaacttcacaaggagggcttatgtcgggaaagggaagaaactgctagcgcttcctgtt
gcgtatgggaagtcgctactgctaccagtttcactgagaaatagccagacctag
DBGET
integrated database retrieval system
