Panicum virgatum (switchgrass): 120704603
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Entry
120704603 CDS
T07260
Name
(RefSeq) proline-rich protein 36-like isoform X1
KO
K13095
splicing factor 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120704603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120704603
Spliceosome [BR:
pvir03041
]
Complex A
Other components
Complex A specific factors
120704603
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
KH-I_KHDC4-BBP
SF1-HH
KH_1
Motif
Other DBs
NCBI-GeneID:
120704603
NCBI-ProteinID:
XP_039844994
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Position
4K:48073169..48078751
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AA seq
761 aa
AA seq
DB search
MATKLDQPSPAEHRRPKSAAPQSLTPKISIFGTKAGFVIPKNKLAGSIVTRGATSKNDTA
TTSKEDNSRHAQRKTKWGPDLAADPAVCKGRALAYQTRVEQITKQLKSETLDMDETEGSM
STGKGSNSAGTANLKDNKQGKVALLELERSEIIGEILRLNPGYKVPENYKPVLKEAKIPL
PAEAHPGHGIIGVLIGPESNTQKRLHEETGAVIQVHGTKKINGEMSEILYQDINEVQAAY
EDLHINVSADSYDKIDAAVALIELLLAPVSVKSTATSTTTTVSSAVTSDDVNPVQNTTSQ
QGLLHYQSNNAPWLSTPQTYGPPVPSSGPALSTLPNNSLQPQPLAGPFSIPPYTGQPPHT
NSMPKNPFPVPGPQQPISSVPQHPPQSQANSSFGPFGQPPGIVNPQMTPSSSVPPPVRPL
QIPHASGGWPSFSPITSQSQWPQASPTFMPVRPISVSPLGATPPQGPAALTPPSNIPTMY
RSQQPAVSNFTCSAPLVSRPPAGAQSFSTLAPHGPASVAFPGGTSTQSAYPLSMQVVWTP
GQMRGPPPAFSQVGPTPGIVPPLVASPCPPASGPASTSCSRAPIGALRPPHPVAGDFTFR
PVVSPAPTRDFAASGSQMGIQGRSHPGALFFHPGNQSPNQSFQRPCDGRTVNIMGQTRMH
APPPHLHGAFPRNPSPLELPGGFLGTPPAVQAPQMPAPSNPSSFLPPRPFQPRPSLQLNP
FASRRRQGSNPIYDPFAPTAVQKTEASDPEYEDLMASVGVK
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atggccacaaaactcgatcaaccttctcctgccgagcatcggcgaccaaaatccgctgca
ccacaatctttgactcccaagatctcaatattcgggacaaaagctggattcgtcataccc
aagaacaagctagccggctcaatcgtaaccaggggcgccacttccaagaatgatacagca
actacatccaaggaagataacagcaggcatgctcagagaaagacaaagtgggggcctgac
ctcgccgccgaccctgccgtgtgcaaaggaagggctttggcctaccagactcgagtggag
caaattaccaagcagctgaaatccgaaactttggatatggacgaaactgaaggttcaatg
tccactggaaaagggtcaaattctgctggcactgcaaatctgaaagacaataagcaggga
aaggttgcgctattggaacttgaaagaagcgaaattattggtgaaatactccgtctgaat
ccaggatataaggtgcctgaaaactacaaaccagtacttaaggaggcaaaaatccctctt
ccggccgaagcacatccaggacatggtattattggagttcttataggacctgagagcaat
acccagaagcgactacatgaagaaactggagctgtaatacaagttcatgggactaagaaa
atcaacggagagatgagtgagattctttatcaagacataaatgaagttcaagctgcttat
gaagacctacacatcaatgtctcagctgactcttatgataaaatagatgctgcagttgca
ttgattgagctgcttctggctcctgtttctgtgaagtcaaccgctacttcaacaactact
actgtttcttcagccgttacctccgatgatgtaaatccagtgcagaatacaacttcacag
caaggtttgcttcattaccaatcgaataatgctccttggctgtctactccccagacctat
ggtccaccagttccttcctcagggcctgctttgagtacattacctaacaattcattgcaa
ccacaaccgctcgctggtcctttcagtattcctccatatacaggccaacctcctcacacg
aatagcatgccaaaaaatccatttcctgttcctggacctcagcaaccaatatcaagcgtt
ccacaacatccacctcagtcccaagccaactcctcatttgggccttttggtcaaccacct
ggaattgtaaacccacaaatgacaccatcttcctcagtgccaccaccagttaggcccctt
caaataccccatgcatctggtggatggccatctttttctcccattacgtcgcaatctcag
tggcctcaagcttcaccaacttttatgccagtgagacctatttccgtgtctcctcttggt
gcaactccaccacagggtcccgctgcactgacacctccatcaaatatccccaccatgtac
cgcagccagcagccagcagtatcaaatttcacttgttcagcaccattggtttccaggcct
cctgctggagctcagtccttttctacacttgcgcctcatggtcctgcctcggtagcattt
cctggtgggacatcaacacagtcagcttacccactttccatgcaagtagtttggacacct
ggtcaaatgagaggcccacctccagctttctctcaagttggaccaactcctggcattgtg
cctccattggttgcatctccctgcccgccggcctcaggtcctgcgagcacaagctgtagt
cgggcaccaattggagcattgagacctccacaccctgtggctggtgattttacctttcgg
cctgttgtgtcacctgcacctactcgagacttcgcagcatcaggaagtcaaatgggaata
caaggcagaagtcaccctggcgcactattcttccatcctggcaatcagagccccaatcaa
agcttccaaaggccttgtgatgggaggacagtgaatattatgggtcagactcggatgcat
gctccacctccacacttgcatggagccttccccaggaacccatctcctcttgagttacct
gggggtttcctggggacccctccagcagtacaagcacctcagatgccggcgccatcaaat
ccatcgagttttttgcctccccgcccatttcagccaaggccatcattgcaactgaatcca
tttgcgagcagaagaaggcagggtagcaatccaatctacgatccttttgcaccaacggca
gttcagaaaacagaggcgtcggaccctgagtacgaggatctcatggcatctgttggcgtg
aagtag
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