Panicum virgatum (switchgrass): 120704871
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Entry
120704871 CDS
T07260
Name
(RefSeq) pre-mRNA-splicing factor SLU7-like isoform X1
KO
K12819
pre-mRNA-processing factor SLU7
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120704871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120704871
Spliceosome [BR:
pvir03041
]
Complex C
Other components
Step II factors
120704871
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Slu7
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
120704871
NCBI-ProteinID:
XP_039845342
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Position
4K:complement(34764456..34768811)
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AA seq
535 aa
AA seq
DB search
MATASVSFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKP
SLKHQRKWKSDPNYTKSWYDRGAKIFHANKYRKGACENCGAMTHNKKSCMERPRTVGAKW
TNMQIAPDEKVESFELDYDGKRDRWNGYDPSTYTHVIAEYEAREEARKKYLKEQQLKKLE
EKNGNQDDNDVGSDEDTEDGLKIDEAKVDESNQMDFAKVEKRVRTTGGGSTGTVRNLRIR
EDTAKYLLNLDVNSAYYDPKTRSMREDPLPDMDPNEKFYVGDNQNRLSGQALEFKQLNLH
AWEAFEKGQDIHMQAAPSQAELLYKSFKIKKEKLKSETKEKIMEKYGNAASEEPLPRELL
LGQSEREIEYDRTGRIIKGQDTSVPKSKYEEDVYINNHTSVWGSWWKDHQWGYKCCKQTI
KNSYCTGLAGIEAAEASADLMKANMARKEAAEEESVQHEEKRLATWGTDVPDDLVLDKKK
LAESLKKEDERRREERDERKRKYNVKWNDEVTAEDMEAYRMKKIHHDDPMKDFLH
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgcctcagtctctttcaagtcgcgagaggatcacaggaagcaacttgaattg
gaggaagcacggaaagctggtcttgctcctgcagaggtggatgaagatggaaaggagatt
aatcctcacatcccacagtatatgtcctctgccccatggtatcttaattcagagaagcct
agtttgaaacatcaacggaaatggaaatcagatccaaactacaccaagtcatggtacgat
aggggtgcaaaaatattccacgccaataaatacagaaaaggtgcttgcgaaaactgcggg
gccatgactcataataagaaatcatgcatggaacggcctcgaactgtgggagctaagtgg
actaatatgcaaatagctcctgatgaaaaggtggagtcatttgaactggattatgatggc
aaacgtgaccggtggaatggttacgatccatcaacctacacccatgttattgcggagtat
gaagccagagaagaggcacgaaaaaaatacctaaaagaacagcaactcaaaaaacttgaa
gaaaagaatggtaaccaggatgacaatgatgtgggcagcgatgaggatacagaggatggc
ctgaagatagatgaggctaaagttgatgagagcaatcaaatggattttgctaaggtagag
aagcgtgtgcgtacaacaggtggtggaagcaccggaactgtgaggaacttgcgtatcaga
gaagacacagccaaataccttctaaacctcgatgtaaattctgcatattatgatccaaag
actcgttcaatgcgtgaagatcctttgccagatatggaccccaatgaaaaattctatgtg
ggagacaaccaaaacaggcttagtggacaagctctggagttcaagcaactcaaccttcat
gcttgggaagcttttgaaaagggacaggacatccacatgcaggcagcaccatcccaggct
gaattactgtacaagagtttcaagattaagaaagagaaattgaagtctgaaaccaaggag
aaaattatggaaaagtatgggaatgctgcttctgaagaaccactaccccgggagcttctt
cttggacaaagcgagagagagattgaatatgatcggactggacgtataattaaagggcag
gatacatctgttcctaagagcaagtatgaagaagatgtgtacattaataaccacacgagt
gtttggggttcatggtggaaggatcatcagtggggctataaatgctgcaagcagactatt
aaaaacagttactgcacaggtttggctggaattgaggctgctgaagcttcagcagatttg
atgaaagcaaacatggcccgcaaggaggctgcagaagaggaatctgtacaacatgaagag
aaacggcttgccacttggggaactgatgtccctgatgatcttgttcttgacaagaagaag
cttgctgagtctttaaagaaggaggatgaaaggaggcgagaggaaagggatgaaaggaag
agaaaatataatgtcaagtggaatgatgaggtcactgcggaggacatggaagcctaccgt
atgaagaaaattcaccatgacgatccaatgaaagatttcctgcattga
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