Panicum virgatum (switchgrass): 120704993
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Entry
120704993 CDS
T07260
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00040
Pentose and glucuronate interconversions
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
120704993
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
120704993
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
120704993
NCBI-ProteinID:
XP_039845477
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Position
4K:complement(3712393..3713881)
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AA seq
435 aa
AA seq
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MAAGLIIRSPLPPVLLFCVLATAAAAATNVTTSDEEYWAARAEEAAASNRAAYVSDPVAA
LNRFNAETLRATSRRSLARYRGPCVATNPIDRCWRCRADWAADRRRLAQCARGFGHRAAG
GAAGKIYVVTDASDDEMVIPRKGTLRYGAIQDRPLWIVFARDMVVRLRQELIVSSNKTID
GRGAQVHIVGAQITLQSVAHVIIHGVHIHDAAPHSGGVIRDSKRHHGLRSRSDGDGISVL
SSSHVWIDHVSMYRCADGLVDVVNGSTGITVSNSHFTKHDHVMLFGASNDSPQDAAMQVT
VAFNHFGKGLVQRMPRCRYGFFHVVNNDYTHWRMYAIGGNKNPTIISQGNRFIAPDDPNA
KEVTKREYTPYAEYKDWVWKSQGDVMMNGAFFNESGGQNERKYDQLDFVPAKHGSYVGQL
TRFAGALTCRVGHPC
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggggttaataataaggagccccctgccgcccgttcttctcttctgcgtcctc
gccacggccgccgcggcggcgaccaatgtcaccacctccgacgaggagtactgggcggcg
cgcgccgaggaggccgccgccagcaaccgcgcggcctacgtcagcgaccccgtcgccgcc
ctgaatcgcttcaacgcggagacgctccgggccacgtcgcggcggtccctggcgcggtac
cggggcccgtgcgtggcgaccaaccccatcgaccgctgctggcggtgccgcgccgactgg
gcggcagaccggcggcggctggcgcagtgcgcgcgcgggttcgggcaccgcgccgccggc
ggcgcggccgggaagatctacgtggtgaccgacgcgagcgacgacgagatggtgatcccg
cgcaagggcacgctccggtacggcgcgatccaggaccggccgctgtggatcgtgttcgcg
cgcgacatggtggtgcggctccggcaggagctcatcgtgagcagcaacaagaccatcgac
gggcgcggcgcgcaggtgcacatcgtcggcgcgcagatcacgctgcagagcgtggcgcac
gtgatcatccacggcgtccacatccacgacgcggcgccgcactcgggcggcgtgatccgc
gactcgaagcgccaccacgggctgcgctcccggagcgacggcgacggcatctccgtgctc
tcctccagccacgtctggatcgaccacgtctccatgtaccggtgcgccgacgggctcgtc
gacgtggtgaacggctccacggggatcaccgtctccaacagccacttcaccaagcacgac
cacgtgatgctgttcggcgccagcaacgacagcccgcaggacgcggcgatgcaggtcacc
gtcgccttcaaccacttcggcaaggggctcgtgcagcggatgcccaggtgccgctacggc
ttcttccacgtggtgaacaacgactacacgcactggcggatgtacgccatcggcggcaac
aagaaccccaccatcatcagccagggcaacaggttcatcgcccccgacgaccccaacgcc
aaggaggtgaccaagagggagtacacgccctacgccgagtacaaggactgggtgtggaag
tcgcagggggacgtcatgatgaacggggccttcttcaacgagtccggcggccagaacgag
cgcaagtacgaccagctcgacttcgtcccggccaagcacgggagctacgtcggccagctc
accaggttcgccggcgcgctcacgtgccgcgtcggccacccgtgctaa
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