Panicum virgatum (switchgrass): 120705439
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Entry
120705439 CDS
T07260
Name
(RefSeq) zinc finger protein MAGPIE-like
KO
K25870
zinc finger protein IDD3/4/5/6/7/8/9/10/11/12/13
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120705439
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120705439
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GFIT
Motif
Pfam:
C2CH-4th_BIRD-IDD
C2H2-2nd_BIRD-IDD
C2CH-3rd_BIRD-IDD
zf-C2H2
zf-C2H2_4
zf-C2H2_6
zf-C2H2_jaz
zf-C2H2_STOP2_C
zf-met
Motif
Other DBs
NCBI-GeneID:
120705439
NCBI-ProteinID:
XP_039845688
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Position
5K:complement(337278..339351)
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AA seq
378 aa
AA seq
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MHCLADPDAEVIALSPRALLATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLRQRSGKE
PRKRVYVCPEKSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHS
KTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEETARLSATAAPSAAQSSSNYLFAGAA
GLANMMLPPAPAAPHLKPAAGLSLWGPSSMADIGIGGGAAPVPPHLYADLLAPPTSDAAA
QLACCWLYGNSNGELSSANNASALTTEAQSVPSLFSGQQHAKPLAPTDMSATALLHKAAQ
MGAVTSTMSDDAGAAAMFQQSANGNLTGGSVAYDDDVLSAAARHIKDAVGREETRDFLGV
GVHPLCSSSLLAPLQGRI
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgcactgcctcgcagaccctgatgccgaggtgatcgcgctgtcgccgcgggcgctgctg
gccaccaaccggttcgtgtgcgagatctgcggcaagggcttccagcgcgaccagaacctg
cagctccaccggcgggggcacaacctgccatggaagctgcggcagcgcagcggcaaggag
ccccggaagcgcgtgtacgtgtgcccggagaagagctgcgtccaccacaacccggcgcgc
gcgctgggcgacctcaccgggatcaagaagcacttctgccggaagcacggcgaaaagaag
tggaagtgcgacaagtgcagcaagcgctacgccgtgcagtcggactggaaggcgcactcc
aagacctgcggcaccagggagtacagatgcgactgcggcacgctcttctcgaggcgcgac
agcttcatcacccaccgcgccttctgcgacgcgctggcggaggagacggccaggctcagc
gccaccgccgcgcccagcgcagcccagagcagcagcaactacctcttcgcgggggcggcg
gggctggccaacatgatgctcccgccggcccccgccgcaccgcacctcaagcctgctgct
ggcctctcgctctgggggccgtcgtccatggccgacattggtattggtggtggcgctgcg
ccagtgcccccgcacctgtacgcggatctcttggcgccgccgacctcggacgcggcggcg
cagctggcctgctgctggctgtacggcaacagcaacggcgagctctcctcggcaaacaac
gccagcgcgctgacgacggaggcgcaaagcgtgccctccttgttcagcgggcagcagcac
gccaagcccttggcgcccaccgacatgtccgcgacggcgctgctgcacaaggccgcgcag
atgggtgccgtgacgtccaccatgtccgacgacgctggagcagcagctatgttccagcag
agcgctaacggcaacctcaccggcgggagcgtggcctacgacgacgacgtcttgtcggcg
gcggcgcgccacatcaaggacgccgtggggagggaggagacgagggatttcttaggcgtt
ggcgtgcacccgctgtgctcttcgtcgctgctggcgcctctgcaaggccggatttaa
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