KEGG   Panicum virgatum (switchgrass): 120705439
Entry
120705439         CDS       T07260                                 
Name
(RefSeq) zinc finger protein MAGPIE-like
  KO
K25870  zinc finger protein IDD3/4/5/6/7/8/9/10/11/12/13
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:pvir03000]
    120705439
Transcription factors [BR:pvir03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    120705439
SSDB
Motif
Pfam: C2CH-4th_BIRD-IDD C2H2-2nd_BIRD-IDD C2CH-3rd_BIRD-IDD zf-C2H2 zf-C2H2_4 zf-C2H2_6 zf-C2H2_jaz zf-C2H2_STOP2_C zf-met
Other DBs
NCBI-GeneID: 120705439
NCBI-ProteinID: XP_039845688
LinkDB
Position
5K:complement(337278..339351)
AA seq 378 aa
MHCLADPDAEVIALSPRALLATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLRQRSGKE
PRKRVYVCPEKSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHS
KTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEETARLSATAAPSAAQSSSNYLFAGAA
GLANMMLPPAPAAPHLKPAAGLSLWGPSSMADIGIGGGAAPVPPHLYADLLAPPTSDAAA
QLACCWLYGNSNGELSSANNASALTTEAQSVPSLFSGQQHAKPLAPTDMSATALLHKAAQ
MGAVTSTMSDDAGAAAMFQQSANGNLTGGSVAYDDDVLSAAARHIKDAVGREETRDFLGV
GVHPLCSSSLLAPLQGRI
NT seq 1137 nt   +upstreamnt  +downstreamnt
atgcactgcctcgcagaccctgatgccgaggtgatcgcgctgtcgccgcgggcgctgctg
gccaccaaccggttcgtgtgcgagatctgcggcaagggcttccagcgcgaccagaacctg
cagctccaccggcgggggcacaacctgccatggaagctgcggcagcgcagcggcaaggag
ccccggaagcgcgtgtacgtgtgcccggagaagagctgcgtccaccacaacccggcgcgc
gcgctgggcgacctcaccgggatcaagaagcacttctgccggaagcacggcgaaaagaag
tggaagtgcgacaagtgcagcaagcgctacgccgtgcagtcggactggaaggcgcactcc
aagacctgcggcaccagggagtacagatgcgactgcggcacgctcttctcgaggcgcgac
agcttcatcacccaccgcgccttctgcgacgcgctggcggaggagacggccaggctcagc
gccaccgccgcgcccagcgcagcccagagcagcagcaactacctcttcgcgggggcggcg
gggctggccaacatgatgctcccgccggcccccgccgcaccgcacctcaagcctgctgct
ggcctctcgctctgggggccgtcgtccatggccgacattggtattggtggtggcgctgcg
ccagtgcccccgcacctgtacgcggatctcttggcgccgccgacctcggacgcggcggcg
cagctggcctgctgctggctgtacggcaacagcaacggcgagctctcctcggcaaacaac
gccagcgcgctgacgacggaggcgcaaagcgtgccctccttgttcagcgggcagcagcac
gccaagcccttggcgcccaccgacatgtccgcgacggcgctgctgcacaaggccgcgcag
atgggtgccgtgacgtccaccatgtccgacgacgctggagcagcagctatgttccagcag
agcgctaacggcaacctcaccggcgggagcgtggcctacgacgacgacgtcttgtcggcg
gcggcgcgccacatcaaggacgccgtggggagggaggagacgagggatttcttaggcgtt
ggcgtgcacccgctgtgctcttcgtcgctgctggcgcctctgcaaggccggatttaa

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