Panicum virgatum (switchgrass): 120705474
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Entry
120705474 CDS
T07260
Name
(RefSeq) 25.3 kDa vesicle transport protein
KO
K08517
vesicle transport protein SEC22
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04130
SNARE interactions in vesicular transport
pvir04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
120705474
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
120705474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120705474
Membrane trafficking [BR:
pvir04131
]
SNARE
VAMP, Ykt6, Sec22 (R)
Sec22
120705474
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Gene cluster
GFIT
Motif
Pfam:
Longin
Synaptobrevin
Motif
Other DBs
NCBI-GeneID:
120705474
NCBI-ProteinID:
XP_039845743
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Position
5K:651994..656163
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AA seq
218 aa
AA seq
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MVKLTMIARVTDGLPLSEGLDDGRDLKDADFYKQQAKQLFKNLSKGQHEASRMSIETGPY
LFHYIIEGRVCYLTLCDRSYPKKLAFQYLEDLKNEFERVNGSQIETAARPYAFIKFDAFI
QKTKKLYLDTRTQRNLAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSDTRI
YAEKAKDLNRQALIRKYAPVAIVIGIVLMLFWVKNKIW
NT seq
657 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagctgacaatgatagcacgtgtcactgatggccttccactgtcggagggacta
gatgatggtcgggatctgaaggatgctgatttctacaagcagcaagcaaaacaattgttc
aaaaacttgtcaaaagggcagcacgaagcatcgaggatgtcaatcgagactggaccatac
cttttccactacatcattgaaggccgtgtgtgctatttgacactgtgtgaccgttcttat
cccaagaaacttgcattccagtatctcgaagacctcaaaaatgaatttgagagggtcaat
ggcagccaaattgaaactgctgcaaggccatatgcatttattaaatttgatgcattcata
cagaagaccaagaaactgtatttggataccagaacacaaaggaaccttgccaagcttaat
gatgagctctacgaggtgcaccagattatgactcgcaatgttcaagaagttcttggtgtc
ggtgaaaaactagaccaggtgagcgaaatgtccagtaggttgacctctgatactagaatc
tatgcagagaaggcgaaagatctcaatcgccaggccttaattcgtaagtatgcccctgtt
gccattgtgattgggatagtactgatgctcttttgggtgaagaacaagatatggtga
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