Panicum virgatum (switchgrass): 120705647
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Entry
120705647 CDS
T07260
Name
(RefSeq) RAN GTPase-activating protein 1-like
KO
K14319
Ran GTPase-activating protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120705647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120705647
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
120705647
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WPP
LRR_6
LRR_4
NPIP
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
120705647
NCBI-ProteinID:
XP_039846032
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Position
5K:complement(2656541..2661296)
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AA seq
551 aa
AA seq
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MDSAAQNFQPRTFSIKLWPPSESTRLMLVERMTKNLSTESIFSRKYGLLGKEEAHENAKR
IEQLCFVAADEDFKKEPDGDGSSAVQLYARETSKMMLEVLKKGPRVTAESEVPVADTPLV
PGDTVLDISGGKRAFIEADEAKELLSPLTKPGNSYKRICFSNRSFGVDAANVAGSILESV
KNQLTEVDISDFVAGRPEDEALDVLRIFSKALEGCVLRYLNISDNALGEKGVRAFSELLK
SQDNLEELYVMNDGISEDAAKALSELIPSTEKLKVLHFHNNMTGDEGAVYVAEMVKRSPN
LESFRCSATRIGSDGGVALSEALGTCTHLKKLDLRDNLFGVDAGIALSKTLPKLPDLVEL
YLSDLNLENKGTLAIVNALKLSAPQLEVLELAGNEINAKAAPGIAECLTAMQSLKKLTLA
ENELKDAGAVIIAKSLEDGHTNLKELDVSTNMFQRAGARCFARAVANKPGFVQLNINGNF
ISDEGIDEVKDILKAGKNSLDVLGSLDENEPEGEPDDGDEDDGDEDAKDDNVEDGLDSKL
QNVQVEQDDEP
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggattcagcagcacaaaacttccaacccaggacattctccatcaagctgtggccaccg
agtgaaagcacacgcctcatgcttgtagagaggatgaccaagaacctgtccactgagtcc
atattttcccggaagtatggacttttgggcaaggaagaggctcatgagaatgctaaaagg
attgaacagctgtgctttgtagctgcagatgaggatttcaagaaagaacctgatggtgac
gggagttctgctgtccagctgtatgctagagaaactagcaagatgatgctggaagttctt
aagaaaggcccaagggttactgcagaatcagaagtgccagtagctgatacacctcttgtg
cctggtgatactgtattagatatatctggtggcaagcgtgcctttatcgaggcagatgaa
gcaaaggaactgttgagtccacttaccaaaccaggaaactcgtataaaaggatttgcttt
agcaacaggagttttggtgttgatgctgctaatgttgcaggatccattctcgaatctgtt
aagaatcagcttacagaggtagatatatctgattttgttgcaggaaggccagaagacgaa
gctcttgatgtgttgcgcatattctccaaagcactagagggttgtgtactgagatatcta
aacatctctgacaatgcactaggtgagaagggtgtcagggcattcagtgagcttctgaaa
tcacaggataatctggaagaactctatgtcatgaatgatggcatatcagaggacgctgca
aaagctctttctgagcttattccttcgactgagaaacttaaggttctccacttccacaac
aacatgactggagatgaaggtgctgtgtatgtcgctgagatggttaagcggtctccaaat
ctggagagtttcaggtgctcagcaacaaggataggatctgacggtggtgtcgcgttgtcc
gaggcattagggacatgcacacatctgaagaaactggatcttagggataacttgttcggt
gttgatgcagggattgctctcagcaaaacccttccaaagcttcctgatctcgttgaactt
tatctcagtgacctcaaccttgagaataagggtacactagcaattgtcaatgccctcaaa
ctgtcagcacctcagttggaagtccttgaattggctggaaatgaaataaatgccaaggca
gccccgggtatagcagaatgcctaacagccatgcagtcacttaagaagctgaccttggct
gagaatgaactcaaggatgccggtgccgtgattattgcaaaatctttggaagatggtcat
acaaatctgaaggaacttgatgtaagcacaaacatgtttcagagggctggagcacgctgc
tttgcacgggcagttgcaaacaaacctggttttgtgcaactgaacatcaatggtaatttc
atctccgatgaagggattgatgaggtgaaagatattttgaaggctggtaagaattcgctg
gatgttttgggctcactagatgagaacgaacctgagggggagcctgatgatggtgatgag
gatgatggtgacgaagatgccaaggatgataacgtcgaggacgggctggattcgaagctg
cagaacgtacaggtggagcaggacgatgaaccatga
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