Panicum virgatum (switchgrass): 120705654
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Entry
120705654 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120705654
KO
K03504
DNA polymerase delta subunit 3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03030
DNA replication
pvir03410
Base excision repair
pvir03420
Nucleotide excision repair
pvir03430
Mismatch repair
pvir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120705654
03410 Base excision repair
120705654
03420 Nucleotide excision repair
120705654
03430 Mismatch repair
120705654
03440 Homologous recombination
120705654
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120705654
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvir03032
]
120705654
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120705654
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120705654
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
120705654
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
120705654
MMR (mismatch excision repair)
DNA polymerase delta complex
120705654
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CDC27
Motif
Other DBs
NCBI-GeneID:
120705654
NCBI-ProteinID:
XP_039846043
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All DBs
Position
5K:2720060..2724998
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AA seq
516 aa
AA seq
DB search
MAGGAADQSLLDLLPRIHALFSDPLRVISYKWLSRNFSVSSNDAKRLLQEFVNKNGTDLQ
VIYSVSGWLKNNPQNYCVKLTSGPKLEEARQAFKDSCSVQVYSIQACIPKDTAVLWNPEF
VQAEELFNQPFDVENCLRDNRFCGVLNSFVKRTSSGKHVNSLPPKPVNSATAVAQSKPIV
TPTEQFVTARQQDLPGPSNPKQGAGNKSEKGNSAVLDKAGNVPVVKEPSVAAHANKNKAQ
NGKALTGNGGSLANMWGRASAKPKPPATTNFTAVASVAATADAQICAKEEADADSSDDEQ
GIKYKSGSCGANNRKRRAVLDFSDDEEDGNIVSIASPELPKQHAPDPVTETAEETRANQK
KLENKDDVPNNVKGCSRGLESEFASECKTKSVSTMNHSGITLKEKSSDPPVNDNKLNSTA
EPASTSPKRRKVLKKRIDERGREVTEVVWEGEASAGDKTEKNVTTTASSGSTLPSKPQPS
ANSDKSKAPSKAAGSKKPAKAAGTKQGSIMSFFKKA
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcggggccgcggaccagtcgctgctcgacctgctgccccggatccacgccctc
ttctccgacccgcttcgcgtgatttcatataaatggcttagtcggaacttctctgtatcg
tcaaatgatgccaagaggttgcttcaggagtttgtcaacaaaaatggaaccgacctccaa
gtgatctacagtgtgtcggggtggctaaagaacaatccccaaaattactgtgtaaaactc
acttctggcccaaaacttgaagaagcaagacaagcattcaaagattcttgttcggtccag
gtctacagtatccaggcttgtattccaaaagatacagctgtactttggaatcctgaattt
gtgcaggcagaagaacttttcaaccagccttttgatgtagagaactgtttgagagataat
aggttttgtggtgttttgaattcttttgtcaaacgaacatccagtgggaagcatgtgaat
tcattgccaccaaagcctgtaaatagtgctacagcagtagcacagtcaaaacctattgtt
actccaacggagcagtttgttactgctcggcagcaagatttacctggaccgtctaatcca
aagcagggagcaggcaataagtctgaaaagggtaattccgcagtattagataaagctggc
aatgttcctgttgtcaaagaaccatcagttgctgcccatgctaacaaaaataaagctcag
aatggcaaggccttgactggtaatggtggatcgctggctaacatgtggggccgtgcatca
gcaaaaccaaagcctccagctaccactaattttacagctgtagcaagtgttgcagctact
gctgatgcacaaatatgtgcaaaggaggaagcagatgctgatagcagcgacgatgaacag
ggaataaagtacaagagcggatcttgcggtgcaaataacagaaaaagaagagcagtactt
gatttttcagatgatgaggaagatggtaatattgtaagcattgcatctcctgagctacca
aaacagcatgccccggaccctgttaccgaaactgctgaagaaactcgagcaaatcaaaag
aaattggaaaataaagatgatgtaccaaataatgtgaaaggttgttcaagggggttggag
tctgagttcgcttctgaatgtaaaaccaaaagtgtcagtactatgaaccattctgggatt
actttaaaggaaaagagcagtgatcctccagtgaatgataataagctgaattccacagct
gagcctgcttccacctcaccgaagagaagaaaggttttgaagaaacgcatagatgagcgg
ggaagggaagttactgaggtggtttgggagggtgaagcttctgcgggtgacaagacagag
aagaatgtgacaactactgcttctagtgggtcgactcttccaagcaagccacagccatca
gcaaactctgacaagagcaaagctccaagcaaggcagcaggcagcaagaaacctgcgaag
gccgccggcaccaagcaagggagcatcatgtcattcttcaagaaggcatag
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