Panicum virgatum (switchgrass): 120705688
Help
Entry
120705688 CDS
T07260
Name
(RefSeq) coatomer subunit alpha-3-like
KO
K05236
coatomer subunit alpha
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120705688
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120705688
Membrane trafficking [BR:
pvir04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
120705688
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120705688
Exosomal proteins of bladder cancer cells
120705688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
TPR_COPA_B
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Fis1_TPR_C
ENTH
Zn_ribbon_3
Zn_ribbon_19
zf-CHCC
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
120705688
NCBI-ProteinID:
XP_039846101
LinkDB
All DBs
Position
5K:complement(3142649..3148508)
Genome browser
AA seq
1215 aa
AA seq
DB search
MLTKFETKSNRVKGLAFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFH
ATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHAEYPWIVSASDDQTIRIW
NWQSRTCVAVLTGHNHYVMCASFHPEEDLVVSASLDQTVRVWDIGALRKKSVSPADDIMR
LTQMNTDLFGGIDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWE
VDTLRGHMNNVSCAMFHAKQDIIVSNSEDKSIRIWDATKRTGIQTFRREHDRFWILAAHP
EMNLLAAGHDSGMIVFKLERERPAFSVSGDTVFYVKDRFLRYYEYSTQKEVQVAPIRRPG
TVSLNQSPRTLSYSPTENAILICSDVDGGSYELYIVPKDSAGRSDYLQEARKGAGSSAVF
IARNRFAVLEKSSNNVLVKNLKNEIVKKTPLPVATDAIYYAGTGNILCKAEDRVVIFDLQ
QRLVLGELQAPTVKYVVWSSDMESVALLSKHAIIIANKKLVHRCTLHETIRVKSGAWDEN
GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITRVIGNIIFCIDRDGKNKLVTVDASEYI
FKLALFRKRYDHVMSMIKNSQLCGQAVISYLQQKGFPEVALHFVKDEKTRFNLALESGNI
QIAVASAKELDDKDHWYRLGIEALRQGNVGIVEYAYQRTKNFDRLAFLYLITGYLDKVGF
MCKIAGQNNNFMGQFHNALYLGDVRKRVEILENTGQLALAYVTAATHGLTEIADRLAAEL
GENIPSLPDGKASSLLIPPAPLMSCSDWPLLRVMRGIFDAGLDATGRADQDEDYDDAGGD
WGDEDLEIVDVNNVVENGDVVDHSEEDEVNEEEGGWDLEDLELPPETETPKAAGPARSAL
FVAPTPGMPVSQIWTQKSSLAGEHAAAGNFDTAMRLLSRQLGIKNFAPLKPLFLDAHMGS
HTFLRAFTSAPVISVAVEKGWSESASPNVRGPPALVFNFSQMDDKLKAAYKATTEGKFPE
ALRQFLSILHTIPLLVVDSRREVDEVKELIVIVREYVLGLKMEVKRKEMKDDPIRQQELA
AYFTNCKLQKVHMRLVLTSTMGLCFKGGNYATAANFARMLLENSPNEAQSKKARQVVQAC
GDRKDGRQLNYDFRNPFVVCGATFVPIYQGQKNVSCPYCGSRFVPSVEGELCSICELSVV
GADASGLLCSATQSR
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgctcaccaagttcgagaccaagagcaaccgggtcaagggcctggccttccacccgcgg
cggccatggatcctggcgagcctccacagcggggtgatccagatgtgggactaccgcatg
ggcaccctcctcgaccgcttcgacgagcacgacgggcccgtccgcggagtccacttccac
gccacccagccgctcttcgtctccggaggtgatgattacaaaatcaaggtgtggaactac
aaaacccaccgctgcctattcacactacacggccacctcgactacattcgcaccgtgcag
ttccatgccgagtatccttggattgtcagtgctagtgacgaccagacaatccggatctgg
aactggcagtcacgcacctgcgtcgccgtgctcacaggtcataatcactacgtcatgtgt
gcctccttccatcccgaggaggaccttgtggtgtcagcgtctttggaccaaactgtgcgg
gtatgggatattggggcactcaggaagaaatcagtctcaccagcagatgacattatgcgc
ctcacccaaatgaatactgatctattcggaggaattgatgcagttgtcaagtatgtcttg
gaaggccatgaccgaggggtcaactgggcctcatttcatcccacattaccacttattgtt
tctggggctgatgaccgccaagtcaaactgtggagaatgaacgacacaaaagcttgggag
gttgatactctcaggggccacatgaacaatgtgtcatgtgccatgttccacgcgaagcag
gacatcattgtttccaactcggaagataaaagcatccgcatctgggatgccacaaagaga
actggcatccagacattcaggcgggagcatgaccgtttctggattcttgctgcgcaccct
gaaatgaatcttcttgctgctggtcatgacagtggcatgattgtttttaagttggagagg
gaacgccctgctttcagtgtgagtggtgatacagtattctatgttaaggaccggttcctc
cggtattatgaatactccacacagaaagaggtccaggtagctccgatcagaaggcctgga
acagtcagcttgaatcagtctccaagaacattgtcatatagtccaactgagaacgcaatc
ttgatctgttctgatgtggatggaggctcatacgagctatacattgtgcccaaggactct
gccggcaggtctgattatttgcaggaggcaaggaagggagctggcagttctgcagttttc
atagcccgcaatcggtttgcagtgctggagaagagcagcaacaatgttttggttaagaac
cttaagaacgagattgtgaagaaaacccctcttcctgttgcaacagatgcaatttattac
gctgggactggcaacatattgtgcaaagctgaagacagggtggtaatctttgatctgcag
cagaggcttgttctcggcgaactccaggcacctactgttaagtatgtagtttggtccagt
gatatggagtctgttgcactgctgagcaagcatgccattatcattgcaaacaagaagctt
gtccaccgctgcacacttcatgagaccatacgtgtgaagagtggtgcctgggatgaaaat
ggtgtattcatatacaccactttgaaccacatcaagtattgccttcctaatggagacagt
ggcatcatcagaacacttgatgtcccaatttacataaccagagttattgggaacatcatc
ttctgcatagatcgtgatggaaagaacaagctggtaacagttgatgcttctgagtacatt
ttcaagcttgcccttttccgtaagcgctatgaccatgtcatgagcatgattaagaactcg
cagctgtgcgggcaggccgtgatttcttatttgcaacagaagggatttccagaagtcgcc
cttcactttgtgaaagatgagaagacaagatttaacctggctcttgagagtggaaacatc
cagattgctgttgcttcagcaaaggaactcgatgacaaggatcactggtacaggttggga
attgaggctctgagacagggaaatgttggtatagttgagtatgcataccagcggactaag
aattttgacaggcttgcttttctgtatcttataactggttacttggacaaggtgggcttt
atgtgtaagatagctggccagaataacaatttcatgggccagttccacaatgcactttat
ctcggggatgtgcggaagagagttgaaatcttggagaacacagggcagttagctcttgca
tatgtaacagctgccactcatgggctcacggaaatcgctgataggcttgctgctgagttg
ggggagaatatcccttctctaccagatgggaaagctagctcacttttgattcctcctgct
cctcttatgtcttgcagtgactggcctttactgagggtgatgcgtggtatctttgatgcg
gggctagatgctactgggagggcagatcaggatgaagattatgatgatgctggtggtgat
tggggtgatgaagacctagagattgttgatgtgaacaatgtggtggaaaatggagatgtc
gttgaccacagtgaggaagatgaggtaaatgaagaggaaggtggctgggacctagaagat
ctggaattgccaccagagacagagacaccaaaagctgctggtccggcccgctccgctttg
tttgtggctccaacgccaggtatgcccgtcagccaaatttggacacagaagtcatccctt
gctggggagcatgctgcagctggcaactttgacactgcgatgcggctgcttagccgccag
cttggaataaaaaattttgctcctctgaagccattgttccttgatgcacacatgggcagt
cataccttcctgcgtgcatttacaagtgctccagttatatctgttgctgttgagaaaggg
tggagtgaatctgctagtcctaatgtgagggggccacctgcacttgtgtttaatttctca
cagatggatgacaagcttaaggctgcatataaagccacaaccgagggtaaattcccagag
gcactgaggcagttcctgagcatcctgcacacgatcccactccttgtggtggactcgcgg
agagaagtggatgaggtgaaggaattgattgtgatagtgagggagtatgtccttggtctt
aagatggaagtgaaaaggaaggagatgaaagatgaccccatcaggcagcaggagctggct
gcctacttcactaactgcaagctgcagaaggtccacatgcggcttgtcctgactagcact
atggggctttgtttcaagggtgggaactatgctactgcagcgaactttgcgcggatgctt
ctggagaacagccctaatgaggcccagtcgaagaaggctcgccaggttgtgcaggcctgt
ggggataggaaagatgggcgccagctgaactatgacttcagaaatccatttgtggtgtgt
ggggcaacctttgttcccatataccagggacagaagaatgtttcatgtccatactgtgga
tctcggtttgtgccctcggtggaaggtgagctgtgtagcatatgtgagctctcagtggtt
ggagcggatgcttcgggcctcctctgctctgctacacaatcgagataa
DBGET
integrated database retrieval system
