Panicum virgatum (switchgrass): 120705786
Help
Entry
120705786 CDS
T07260
Name
(RefSeq) protein GIGANTEA
KO
K12124
GIGANTEA
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
120705786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PMI1_PMIR1-2_C
Motif
Other DBs
NCBI-GeneID:
120705786
NCBI-ProteinID:
XP_039846231
LinkDB
All DBs
Position
5K:4522928..4531622
Genome browser
AA seq
1161 aa
AA seq
DB search
MSASNENWIDGLQFTSLFWPPPQDVLQKQAQILAYVEYFGQFTADSEQFPEDVAQLIQSC
YPSKEKRLVDEVLATFVLHHPEHGHAVVHPILSRIIDGTLCYDRHGPPFSSFISLFSHTS
EKEYSEQWALACGEILRVLTHYNRPIFKAERQRCEAECSSTSDQATSSDSTDEKSDGSPG
NEPDRKPLRPLTPWITDILLAAPLGIRSDYFRWCGGVMGKYAAGGELKPPTTACSRGSGK
HPQLMPSTPRWAVANGAGVILSVCDEEVARYETANLTAAAVPALLLPPPTTPLDEHLVAG
LPPLEPYARLFHRYYAIATPSATQRLLFGLLEAPPSWAPDALDAAVQLVELLRAAEDYAT
GMRLPKNWMHLHFLRAIGTAMSMRAGIAADTAAALLFRILSQPTLLFPPLRHAEGVEVHH
EPLGGYVSSYKRQLEVPASEATIDATAQGIASLLCAHGPDVEWRICTIWEAAYGLLPLSS
SAVDLPEIVVAAPLQPPTLSWSLYLPLLKVFEYLPRGSPSEACLMRIFVATVEAILRRTF
PSETSEQSRKPRSQSKNLAVAELRTMIHSLFVESCASMDLASRLLFVVLTVCVSHQALPG
GSKRPTGSDNHSSEEVAENSRLTNGRNRCKKRQGPVATFDSYVLAAVCALSCELQLFPLI
SKNGSHSSIKDSMKIIVPGKTNGINTELHNSISSAILHTRRILGILEALFSLKPSSVGTS
WGYSSNEIVAAAMVAAHVSELFRRSRPCLNALSALMRCKWDTEISTRASSLYHLIDLHGK
TVSSIVNKAEPLEAHLTLTPVKRDNLQHSEGNNISSSDSGKMENKNGSTSHKKNGFSRPL
LKCAEEVLLNGDVASTSGKAIASLQVEASDLANFLTMDRNGGYRGSQTLLRSVLSEKQEL
CFSVVSLLWQKLIASPEMQMSAESTSAHQGWRKVVDALCDVVSASPTKASTAIVLQAEKD
LQPWIARDDEQGQKMWRVNQRIVKLIAEVMRNHDSPEALVILASASDLLLRATDGMLVDG
EACTLPQLELLEVTARAVHLIIEWGDSGLSVADGLSNLLKCRLSPTIRCLSHPSAHVRAL
SMSVLRDILNNGHINPSKIIQGEQQRNGIQSSSYRCLAASINWQADVQRCIEWEAHSRRA
TGLTLAFLSAAAKELGCPLPC
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcttcaaatgagaattggattgatgggctccagttcacatcactgttctggcct
ccaccccaggatgtgctgcagaaacaggcacaaattttggcctatgttgagtactttggc
cagtttacagctgacagcgagcaattccctgaagatgtagcacagctcattcaaagttgc
tacccatcgaaagaaaaacgcttggtagatgaagtgttggcaacttttgttcttcatcat
cccgagcatggtcatgcagttgtacatccaattctttcacgtatcatagatgggacactg
tgctatgatagacatggtcccccattcagctccttcatctctttgtttagtcatacttct
gagaaagagtactcagagcagtgggccttggcatgtggtgaaattctcagagtcttgact
cactacaataggccaatattcaaagctgagcgccaacgttgtgaagctgaatgtagcagc
acatctgatcaggcaacatccagtgattccacggatgagaaatctgatggttccccagga
aatgaacctgatcggaagccattgaggccattaactccatggatcactgacatattgctc
gctgcacctttgggaattagaagcgactactttagatggtgtggtggtgtaatgggaaaa
tatgctgctggtggagaattgaagcctccaacaactgcttgcagccgaggatctgggaag
cacccgcaacttatgccatccacccccagatgggctgttgccaatggagctggtgttata
ttaagtgtctgtgatgaggaggtagctcgttatgagacagcaaatttaaccgcagcagct
gttcctgcgcttctgctacctccaccgacaacaccattggatgagcatttggtggctggc
ctgccccctctcgaaccatatgctcgtttgttccatagatactatgcaattgctactcca
agtgctacacagaggctgctttttggtcttctcgaagcacctccatcatgggctccagat
gcactggatgcagcggtgcaactagttgaactacttagagcagcagaagattatgctact
ggcatgcggcttccaaagaattggatgcatctacacttcttgcgagcaattggaactgca
atgtcaatgagagctggtattgctgccgataccgctgctgctttgcttttccgcatactt
tcccaaccaacactactttttccacctctgagacatgccgaaggagttgaagtacatcat
gaaccactgggtggctatgtatcatcttataagaggcagttggaagttcctgcttctgaa
gccactatcgatgccactgcacaaggcattgcgtccttgttgtgtgctcatggccctgat
gtcgagtggagaatatgtaccatctgggaagctgcctatggtttgctgcctctaagttca
tcagcagttgatttacctgaaattgtcgtagctgccccgcttcaaccacctacactgtca
tggagcctgtacttgccattattaaaagtatttgagtacctacctcgtggaagtccatct
gaagcatgcctgatgaggatatttgtggcaacagttgaagctatactcaggagaactttt
ccttctgaaacctcagaacaatccagaaaaccaagaagtcaatctaagaaccttgctgtc
gctgaactccgcacaatgatacattcacttttcgttgaatcctgtgcctcaatggatctt
gcctcccggttactatttgtggtgctaactgtttgtgtcagtcatcaagctttaccaggg
ggcagcaaaagaccaactggtagtgataaccattcttctgaggaggtcgctgagaattca
agattaacaaatggaagaaacagatgtaagaagagacaagggcctgttgctacatttgat
tcatatgttttagctgcagtttgtgccttgtcttgtgagcttcagctgttccctctcatt
tctaagaacggttcacattcaagtataaaggattccatgaagattattgtacctggaaaa
accaatgggatcaatactgagctacacaatagcatcagctcagcaattcttcatactcgc
agaattcttggcatcttggaagctcttttctccctgaagccatcatcagttggcacctcg
tggggctatagctcaaatgaaatagttgcagcagctatggtcgctgctcatgtttctgag
ttattccgtagatccaggccgtgcctaaatgcactctctgcactgatgcgatgcaagtgg
gatactgagatttctaccagggcatcgtccctttaccatttgattgatttgcacggtaaa
acagtgtcctccattgtgaacaaggctgagcctcttgaagctcacctgacccttacacca
gttaagagggataatctacagcactctgagggaaacaatatcagctcatcggatagtggc
aagatggagaacaagaatggttcaacctcacataagaaaaatggtttctcaagaccactc
ttgaaatgtgcagaggaggttctactaaatggagatgttgcaagtacatctgggaaagcc
attgcaagcttacaagtggaagcatctgatttggcaaacttccttaccatggatcggaat
gggggttaccgaggttctcaaactctcctacgatctgtactgtcagagaaacaagaactg
tgcttctctgttgtctcactgctctggcagaagctcatagcttctcctgaaatgcagatg
tctgcagagagtacgtcagctcaccaaggatggagaaaggttgtagatgcgctttgtgat
gttgtttcagcctcaccaaccaaggcttcaactgctattgttctccaggccgagaaggac
ttgcagccttggattgctagagatgacgagcaaggtcagaagatgtggagagtcaaccag
cgaatagtgaagcttatagctgaggttatgaggaaccatgacagcccagaagcattggtg
attcttgctagtgcttcagaccttctacttcgtgctactgatggaatgcttgttgatggt
gaagcttgtactttgccacaacttgagcttctggaagtaaccgctcgagcagtccatctc
atcattgaatggggagattcaggtttatcagttgctgatggcctctctaatctgctgaag
tgccgtctatcgcccacaatccgttgcctttctcacccaagtgcacatgtgcgagcactc
agcatgtccgttctccgcgacatcttgaacaacggacacattaaccccagcaagatcatc
caaggggaacaacaacggaacggtatccagagctcgtcctaccggtgcctggcagcatcc
atcaactggcaggcggacgtgcagaggtgcatagagtgggaagctcacagccgccgcgcc
accgggctgacgcttgccttcctcagtgcagcggctaaggagctcggctgccccctccct
tgctga
DBGET
integrated database retrieval system
