Panicum virgatum (switchgrass): 120705846
Help
Entry
120705846 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
3.6.4.13
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120705846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120705846
03009 Ribosome biogenesis [BR:
pvir03009
]
120705846
Spliceosome [BR:
pvir03041
]
Complex A
U1 snRNP components
U1 related factors
120705846
Complex B
120705846
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Helicases
120705846
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
120705846
NCBI-ProteinID:
XP_039846310
LinkDB
All DBs
Position
5K:5280862..5285744
Genome browser
AA seq
661 aa
AA seq
DB search
MASSASAPASKGPRYAPPDPTLPKPWRALIDGNTGYLYFWNPETKVTQYERPVAAVPSSP
SQPPGYSRPEERARSSGPSESRSEAAVSRSQYAPSSDNRTRNDHSESAQFTNQFSQAGNG
SQMSTEAYRAKHEITIVGNEAPAPFMTFQSTGFPSEILREVLQAGFSAPTPIQAQSWPIA
LKGRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSREGPTVLVLSPTRELATQIQDEAIK
FGRSSRISSTCLYGGAPKGPQLRELDRGADVVVATPGRLNDILEMNRVSLRQVSYLVLDE
ADRMLDMGFEPQIRKIVKQIPSKRQTLMYTATWPKEVRKIASDLLVNPIQVNIGNTDQLV
ANKSITQHVEVISHSEKSRRLDQILRSQEPGSKVIIFCSTKRMCDQLARNLSRQYVASAI
HGDKSQAERDSVLSDFRSGRCPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGR
TGRAGATGSAYTFFGDQDSKYASDLVKILEGADQSVPQQLKEMALRGGYGGRSRRWASSD
NSYGGQGYGAKRSTDSFNNSNFGNQAGGGSSFHSSFYNNTSGSQFGDTPSFRGSYDNSSH
NNQSGDASFPPSSGNNQSGDGLSFHERFYGPLGGDQSRTSNDGFRARSRSPPGKAVGVSN
W
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtcggcgtctgcgccggcgtccaagggtccgcgctacgcgcccccggatccg
acgttgcccaagccgtggagggcgcttatcgacggcaacaccgggtacctctacttctgg
aacccggagaccaaggtcacccagtacgagcgccccgtcgcggccgtaccctcctccccg
tcgcagccgcctggctactccaggcccgaggagagggcgaggagcagcgggccttccgag
tcacgttcggaagctgcggtgagccgctcgcagtatgcgccttcctctgataacagaaca
aggaatgatcactcagagagtgctcagttcaccaatcaattttctcaagccggcaatgga
agccaaatgtcgacagaagcatatcgtgctaagcatgagattactattgttggcaacgag
gcaccagcaccattcatgacatttcagtcaacgggctttccttcagagattctaagggag
gttctgcaagcaggattctctgcaccaactcctatacaagctcagtcatggccaattgct
ctaaaagggcgtgatattgtagctgtggcaaagacaggttctggaaaaacactgggatat
ctaattccagggtttatacttctgaagcgcctacagcataattcaagggaaggtccaaca
gtattagttttgtctccaaccagggagttggcaacacaaattcaagatgaagcgatcaag
tttggcagatcttcaagaatatcttccacttgcttatatggaggtgccccgaaaggccct
cagctaagagagttggatcgtggtgctgatgttgttgttgcaactcctgggagattgaac
gacattttggaaatgaatagagtgagcctgcgtcaagtatcatatcttgtccttgatgaa
gctgaccgtatgcttgatatgggatttgagccacaaataagaaaaattgttaaacaaata
ccttctaaacggcaaactcttatgtacactgccacatggccaaaagaggtgagaaaaata
gcatcggatttactggttaatccaattcaagttaacattgggaacacagatcagctggtc
gcaaataagtcaattacccagcatgtggaagttatctcacattcggagaaatcaagacga
cttgatcagatcttgcgttcacaagagcctgggtccaaggtcataatattttgctctacc
aagaggatgtgtgatcagctggctcggaacctatcacggcagtatgttgcttctgctatt
catggtgataaatcacaggctgagagggattctgtgttgagtgactttcgaagcggaagg
tgtccagttcttgtagccactgatgtggccgctcgaggcttagacataaaggatatcaga
gtcgtggttaactatgatttcccaactggtgtggaggactatgtccatagaattgggagg
acaggcagggctggtgcgacaggatctgcctacacattcttcggtgaccaggactcaaag
tatgcttcagaccttgtgaagattttggagggtgcagaccaatctgtgccacaacaatta
aaagaaatggctcttcgtggaggatatggtggaagatcacgtcggtgggcatcttctgat
aactcttatggtggtcagggatatggtgctaaaagatccactgacagcttcaataacagt
aactttggtaatcaggcggggggcggttcaagctttcactcgagcttctataacaacact
agtggcagtcagtttggtgatactccgagctttcgtggcagctatgataacagcagccac
aataatcagagtggtgatgccagctttcctccgagctccggcaacaatcaatctggggat
ggtctcagttttcatgaaaggttctatggaccacttggaggggatcagagcagaacaagc
aatgatggattccgtgctaggagcaggagtcctccaggcaaggctgtgggagtttccaac
tggtaa
DBGET
integrated database retrieval system
