Panicum virgatum (switchgrass): 120705900
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Entry
120705900 CDS
T07260
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03440
Homologous recombination
pvir03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120705900
03460 Fanconi anemia pathway
120705900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120705900
03036 Chromosome and associated proteins [BR:
pvir03036
]
120705900
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120705900
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
120705900
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
120705900
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
120705900
FA (Fanconi anemia) pathway
Downstream FA components
120705900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA2
BRCA-2_OB1
BRCA-2_helical
Motif
Other DBs
NCBI-GeneID:
120705900
NCBI-ProteinID:
XP_039846380
LinkDB
All DBs
Position
5K:5926577..5938380
Genome browser
AA seq
1560 aa
AA seq
DB search
MPIKWQVWTQPDGSLVWVPATETPPTPPPPPLAAPAAAGPPDPAPPRSPPPDGAPIEENL
GADGGRLPLMASLLLQALDKLTERNGNDALAEGVNTGGMFSTGSGRSVAVSERAIRRASA
LVGEEMEEATNSNRKRKQPFGDDAGLQGEQTNLDVPLGGGAGAHKDNLLPMFQTGSGKIV
PLSKDSVQKARAVLEENVENAAGAKQPMFHTGTGKSVLVSKSSIDKARAVLEGQTVANEG
DAGGMEQFPMFQTGSGRAVSISIASVQIARAVLDENNVNTGNVECPGYPDQSLIFQTGSG
KPVLISERSIERSRAVLMDEGVENTGQRDTGYQLPIFQTGMGRPVAVKQGSIKKAKAVLE
DGDVKRSGNGDTDICATSFQFETPTSVLMSSSLIMNDRTVTPKENTSVQGRCYEGDGHLP
LFQTGLGRSVTVSKSSIKKASAILEPRNIAKELEDEAHLNDVCATSTIKTGLGRSVLSEN
SRENAQIISEAVKRVNSDIGDGVAETPMFQAGIQQFSPENGSSKHRATLLEQGKLATKGY
EDCGNSLPMFQTGSGKSVLVSESSVQKARAVLEEEGDVNRENCKLVKMDKKFPVFASPLK
RSCARTVNVSSAGVSRAATLLGLEEDTLSTQFFGHVGDKLGTKITVKLENPERMLDVAST
HAISGGPHKGFCPTEKPILIERHQQFGFSKTTSDAGGYSIRFSTAGGRSMAISTDALQRA
KNLLSDSGSEISPNGPVGCSLASAKEKQPDSTISPKGDESNLLHGTKVIGYDVPDIPVTK
GNANKFHMGSQYLSINEIPKAPKLPRYLSESDNAIDTKDKTHRHHMPAGPLVDITNYMAT
CSGKNTDHFANGKRVIGGRNSISPFKRPRSTRFITPIKTNKLSSSGESKVAPTQISPCRT
KLSARYPFQHQRKSCKEYFGGPPCFVQSEHVADDVKLMDAKGAEKFKFQHMGTGAEDFQK
MLLRCGASLSYATKEWVSNHYKWIVWKLASLERCYPTRAAGKFLTVDNVFEELKYRYDRE
VNHGHRSAIKKILEGNASPSLMMVLCISAIYSCPDQSDNKLEVDKIDNNEDSNGNKSLSA
SNRNMSAKIELTDGWYSLDASLDMALSEQLEKRKLFLGQKLRIWGASLFGWSGPVSFHEA
SGSVKLMVHINGTYRARWDETLGFCKHAGLPLAFKCIKASGGRVPRTLVGITRIYPVLFR
ERLPDGRSIVRSERMERKVLQLYHQRVSKIAEDIMFEQQENCDSIDDNEGAKICKMLERA
AEPEIIMAGMTSEQLMHFSSYKEKQKEVMQNEVAKKVQKALEVADLSSRDVTPFLKVRVM
GLVSRLSASTSSNKEGLITIWNPTEMQKVDLVEGQIYSVTGLMPSNHFTEILYLHGRGSS
TTWKPLASAQTTDFEPFFTPRKAIELSKFGAVPLSSEFDIAGVILYVGNMYLCNNQKRQW
LFITDGSKFISEQKSEEQDCLLAVSFSSPTTGEDCALFSNTLSGNTVGFSNLVKRPKDQM
RQMWVAEATESSTYTLSYEIPRKSHLKEAAVSAERWASRSCHKIQELKERVLCIVGDSGG
NT seq
4683 nt
NT seq
+upstream
nt +downstream
nt
atgccgatcaagtggcaggtctggacccagcccgacgggagcctcgtctgggtccccgcg
accgagacgccacccaccccgcccccgccgcccctggcggccccggcggcggcgggtccg
cctgatcctgcccctcctcgttcgccgccgcccgacggcgcgccaatcgaagaaaaccta
ggcgccgacggggggcgcttgcccttaatggccagcctactcctccaagcgctggacaag
ttgactgaacgaaatgggaatgatgcactggctgagggtgtcaatacgggtggaatgttc
tccactgggtcggggaggtcggtggccgtcagcgagagggccataaggagagccagtgcg
ttggtcggtgaggagatggaggaggctactaacagtaacaggaagagaaagcaaccattt
ggtgatgatgctggtctgcagggcgaacagacaaacttagatgttccactgggaggtggt
gcaggtgcacataaagataacttgttgccaatgttccaaactggatcaggcaaaatagtc
ccgctcagcaaggactcggttcagaaggcaagagctgttttagaagaaaatgttgagaat
gctgctggtgccaaacaaccaatgttccatactggtacgggtaaatcggtcctagtcagc
aagagctccattgataaggcgagagctgttttagagggtcaaaccgtcgcaaatgaagga
gatgcaggaggcatggaacagtttccaatgttccaaactggttcaggtagagctgtatca
atcagtattgcatctgtacagatagctagggctgtgctagatgaaaataatgtaaataca
gggaacgttgagtgtcctggttaccccgatcagtctctgatatttcaaactggttccgga
aaaccagtcttgatcagcgaaagatccattgagagatctagggctgtgctgatggatgaa
ggtgttgaaaatactggacaacgggatactggctaccagctcccaattttccaaacagga
atgggaaggcctgttgctgtgaaacagggctctattaaaaaggcaaaggcagttttggag
gatggagatgttaaaagaagtggaaatggagataccgatatttgtgctacatctttccaa
tttgaaaccccaacgtctgttttgatgagtagcagtttgattatgaacgacagaactgtt
acaccaaaggaaaatacttcagtgcaaggaagatgttacgagggtgatgggcacttgccg
ttgttccagactgggttagggaggtcagttacagtaagtaagagctcaattaaaaaggca
agtgcaattctggagccaaggaacattgcaaaggaactggaagatgaagctcatctaaat
gatgtttgtgccacctcaacaattaaaactggacttggaaggtctgttttaagcgagaac
tcaagggagaatgcacaaattatctcagaggctgtaaaaagagtgaatagtgacattggg
gatggcgttgctgagaccccaatgttccaggctggaatacaacagttttcacctgagaat
ggaagttcaaaacatagggccaccctcttggagcaaggcaaattggcaacaaaaggatat
gaagactgtggaaattcattgccaatgtttcaaactggatccggaaaatcggtcttggtt
agtgaaagctcagtgcagaaggcaagggctgttttagaggaagaaggtgatgtaaaccga
gagaactgcaagttggttaaaatggacaaaaagtttccagtcttcgcttcacctctcaag
agaagctgtgcaagaacagtaaatgtatcttcagctggtgtttctcgagctgctacctta
ttgggcttggaggaggataccctttcaacacaattttttggacatgtgggtgataagtta
ggtacgaagataactgttaagctggaaaatccagaacgaatgcttgatgttgcatccaca
catgcaatttctggtggccctcataagggtttttgtccaacagaaaaacccatacttata
gaaagacatcagcagtttggattttctaaaactacctctgatgctggtgggtattctatt
aggttcagcactgctggtggccgatcaatggctatttctactgatgcattacaacgtgca
aaaaaccttttgagcgattcaggttcagagatttcaccaaatggtccagtaggctgctcc
ctggcatcagctaaagagaagcaaccagattcaactatttctccaaaaggagacgaatct
aacttattgcacgggactaaagtaattggatatgatgtacctgatatccctgtaactaaa
ggaaatgctaataagtttcatatggggagtcaatatctctcaatcaacgaaattccaaag
gccccaaagcttcccagatatttatctgaaagtgacaatgcaattgacaccaaagacaag
acccataggcaccatatgccagctggacctttggttgacatcactaactacatggctact
tgttctggaaaaaatacggaccactttgctaatggaaagagagtgatcggaggaagaaac
tccatatctccattcaaacggccccgttctaccaggttcatcacaccaataaaaaccaac
aaactttcctcttctggagaatccaaagtagcaccaactcagatcagcccctgtaggaca
aagctgtctgctcgttatcctttccaacatcaaaggaaaagctgcaaagaatattttggt
ggtcctccttgcttcgtacagagtgaacatgtagctgatgatgtgaagctcatggatgca
aaaggagctgagaagtttaaatttcagcatatgggtactggagcagaagatttccagaag
atgctgctcagatgtggtgcttcattatcatacgcaactaaagaatgggtcagtaatcac
tataaatggattgtgtggaaacttgcttcactagagagatgctacccaactagagctgct
ggtaaattcttgacggttgacaatgtttttgaggagcttaagtaccggtatgatagggaa
gtgaaccatggccaccggtcagcaataaaaaagattttagaagggaatgcctcaccatct
ttgatgatggtcctgtgcatttcagctatttactcttgtcctgaccaaagtgacaataag
ttggaggttgacaagatagataataatgaagacagcaatggcaataaaagcttgtcagcc
tctaatagaaacatgtctgcaaaaattgaattaactgatggatggtattcacttgacgca
tcgttagatatggcactttcagaacaactagaaaaaagaaagcttttcttaggacaaaag
cttcggatatggggagcttctttatttggttggtctgggcctgtgtcatttcatgaggca
tctggttctgtcaaattaatggtccacataaatggcacctatcgtgcaagatgggatgag
accttgggattctgcaagcatgctggactcccactggcattcaagtgcataaaagcttcc
ggtggtagagttcctaggactctggttggaatcacaaggatatatcctgttctcttccgg
gaaaggttgcctgatggtcgttctattgtgagatctgaaaggatggaaagaaaggtgctg
caactgtaccaccagagagtatctaagattgcagaagatattatgtttgaacaacaagaa
aattgtgacagcatagatgacaatgagggggctaaaatttgcaaaatgctagagcgtgca
gctgaacctgaaattataatggcaggcatgacctcagagcagttgatgcacttctcatct
tataaagaaaaacagaaggaggttatgcaaaatgaagtagctaagaaggttcaaaaggcc
cttgaagttgctgaccttagttcaagagatgttacaccatttttgaaagtgagggtgatg
gggcttgtcagtagactttctgcttcaacatccagtaacaaggaagggctaataacaatt
tggaaccctactgagatgcagaaagtcgatcttgtggagggacaaatttattctgttaca
ggattgatgccttcgaatcattttactgaaatcctctacttgcatggtagaggatcatct
acaacgtggaagcccttagcatcagctcagactacagattttgaaccattcttcacccct
cgtaaagcaattgaactgtcaaagtttggtgccgtgccgctttcaagtgaatttgacatt
gcaggtgttattttatatgttggcaatatgtatttatgtaacaaccagaaaaggcagtgg
ctttttataacagatggatctaaatttatctccgaacaaaagtccgaagagcaagattgt
cttctagcagttagtttttcttccccaacaactggcgaagactgtgcattgtttagtaat
accctctctggaaacacagttggttttagtaatctggtcaagcgaccaaaagaccagatg
aggcaaatgtgggtagctgaggcaacagagagttctacctacactctttcttatgagatt
cctagaaaatctcacctaaaagaagctgcagtttctgctgagagatgggcttcaagatct
tgtcataaaattcaagagctaaaagaaagggttttatgcatagttggtgacagtggtggc
tga
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