Panicum virgatum (switchgrass): 120705905
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Entry
120705905 CDS
T07260
Name
(RefSeq) transcription initiation factor TFIID subunit 15b
KO
K13098
RNA-binding protein FUS
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120705905
09122 Translation
03015 mRNA surveillance pathway
120705905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120705905
Spliceosome [BR:
pvir03041
]
Complex A
Other components
Complex A specific factors
120705905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
zf-RanBP
Motif
Other DBs
NCBI-GeneID:
120705905
NCBI-ProteinID:
XP_039846392
LinkDB
All DBs
Position
5K:complement(5959763..5963508)
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AA seq
496 aa
AA seq
DB search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NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggtcttacggatccgacgactaccgcggcggcggcggcggcggaggatacggc
ggccgaggtggcggtggaggcggccgcggtcgcggaggcggtggaggagggtatgggggt
ggcagtgggggaggttatggaggtggtggtggaggaggctatggcggtggcggtggaagc
tacggcgtcgggggcggtagaggtggaggcggcggcggcggcggcggcggcttcggtggc
ggagggcgaggtggaggtggccgaggcggcggcggcggcggcggccgcgggggaggacgc
gagggcgactgggtttgccctgatgcgagctgtggcaatgtgaactttgcaagaagaact
gagtgcaacaagtgtggaacaccttgcccaagtggagctggaggtggaggcggcagcggc
ggcggttacaacagatctggtggaggtggtgggggcttcaaccgtggcggtggtgattac
ggttctggaggaggtggctttgacagagatggtgctggtggtggggggagaggaggatac
aaccgaagtggtggtaatgaccgtggttttgatgaccagcgtggtggtagaggtggcagt
tttgggggacgagaccaggaaaaccaaaggggcagtgaaggtggctacaatgctgggggc
tatggacaagctcctccgcaagggcctccttcctatggtgggcctgccggtgactacaca
gcgcctccgaactcctatggaggcaataatgcatatggttcagactctgcagtgccacct
cctaatagctatagcggtggcccagcctcatacccaccaagctatggtgctcctcctcca
aaccaatatggtggtggcgccccaggggggcaagggggtctgcctcctacatatgatggt
ggctatggtggtcggtccatgcctgggggtggaggttctggtggtgcacctccaccttat
catggtggtggcggcggcggtggaggtggtggttatactggtagtgctgctcctgagcca
gctgcaaaggttaagcagtgtgatgcaaactgtgacgagacatgtgacaatgcaagaatt
tacatctcaaatttgccccctgatgtcactgttgaagaactacaggagttatttggagga
atcggacaggttggaaggatcaagcaaaaacgcggctataaagatcagtggccctggaac
ataaaaatctacactgatgactctggaaaagccaaaggagatgcttgccttgcttatgaa
gatccttctgctgctcattcggctggtggattctataacaattatgacatgagaggctat
aaaatcagtgttacgatggctgagaaatcagcacccagagcaccctcttatggtcatggt
ggtggccgtggtggtggctatggtggcggtcgcagggacaattaccgagatggtggtggg
catgggcccaatagaaaccagggtggtggctcgcgttcacgaccttactga
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