Panicum virgatum (switchgrass): 120705917
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Entry
120705917 CDS
T07260
Name
(RefSeq) NF-X1-type zinc finger protein NFXL2-like
KO
K15683
NF-X1-type zinc finger protein NFXL1
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120705917
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
NFX1 proteins
120705917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-NF-X1
Involucrin2
HemY_N
Motif
Other DBs
NCBI-GeneID:
120705917
NCBI-ProteinID:
XP_039846409
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All DBs
Position
5K:6084222..6089636
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AA seq
908 aa
AA seq
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MPSSYAAAAAGSSSRKTNRTSTAAAATARPPAPSPSPAPAPPAANPSAASDSDPSSYSSS
SGDEADLTASDSATASVVSAYLSVAGEGADLSKVGIFLSSAARRRSPPCLICFDPIRPSD
PVWSCSSSCFAILHLPCIQSWAHQSASGAAVPCPTWGCPKCRFAYPKSQTPTSYLCFCSK
TVDPTPDPWILPHSCGDVCGRRLNANLDSGCEHTCLLLCHPGPCPPCPAVVPNAPCFCGA
HREPRRCAHQRYSCAGKCNKRLSCGLHRCPVNCHDGPCPPCAVRGKHKCECGETMEEKLC
SESVFQCKRECGGMLDCGKHRCERGCHGGKCGECPLRGRRTCPCGKKDYPKLECDAEAAT
CGSTCEKVLGCGRHRCPERCHRGPCDETCRLVITKSCRCGGLKKEVPCYQELTCERKCQR
LRNCGRHACKRRCCAGDCPPCSETCDRKLRCGNHKCLSPCHRGACSPCPLMKTISCACGK
TCFEVPCGTEKNQKPPKCSKKCNIPRLCRHKLECRPHKCHYGACPPCKLTCGEELSCGHT
CKERCHGPISPPNPEFTLKPTKKKMEKQIECTPGTLCPPCKEVVLGPCFGQHLGQERAMP
CSKWRPFPCQNLCGNPLLCGNHYCTKSCHVLEVPLNQPEGDPIASVSKENALAEPCEQCD
LPCQRVREPPCSHRCPLPCHLSDCPPCKVLVKKPCYCGAMVHAFECVYFNNLKAKEQLKV
RSCGGPCHRKLPNCPHLCSEVCHPGMCPSVDQCMKKVNVRCACNMLKQEWICQDVLKEYR
NSGRDPKEVPKSQFGAGLIACGEDCKKKVKVPDPELHLRKSQETKNPAVEVASVPKRRKR
RDRGQEVKVSKFQEVKAYVMRVLLIILLSIIIAAGLYLLWKGIFWLSDWMNEMEEQRARQ
RHPRGATL
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcctcctacgccgccgccgcagccggatcctcttcccgcaagacgaaccgcacc
tccaccgccgccgcagccactgcccgcccaccagcaccctcgccgtcgccggcacccgcg
cccccggcggcgaaccctagcgcggcctctgactccgatccctcctcctactcctcctcc
tccggggatgaggccgatctcacggcctccgactcggcgaccgcctccgtagtctccgcc
tacctctcggttgccggcgagggggccgacctctcgaaggtcggcattttcctctcctcc
gccgcgcgccgccgatcgccgccgtgcctgatctgcttcgaccccatccgcccctccgat
ccagtctggtcatgctcctcatcctgctttgccatcctccacctcccctgcatccagtca
tgggcccaccagtcagcctccggcgcagccgtgccgtgcccaacctggggctgccccaag
tgccgcttcgcctaccccaaatcgcagactccgacctcctacctctgcttctgctccaag
acagtagacccgactccggacccctggatcctcccccactcctgcggcgacgtgtgcggc
cgccgcctcaatgcaaatctcgactcaggatgcgagcacacctgcctactgctgtgccac
ccggggccgtgtccaccatgccctgctgttgtccctaatgcgccctgcttttgtggggcg
caccgggagcctcgacgctgcgcacatcagcgttactcttgtgcagggaaatgtaacaaa
cgccttagctgtggactccaccggtgtccagtgaattgccatgacgggccctgcccgccg
tgtgcagtgaggggaaaacacaaatgtgaatgtggagagacaatggaggagaaattatgc
tctgaaagtgttttccagtgcaagagggagtgtggtgggatgttagattgtgggaagcat
aggtgtgagagggggtgccatgggggtaaatgtggcgaatgtccactccgaggtcggcgc
acttgcccatgtgggaagaaagattatccgaagttggagtgcgatgcggaggctgccaca
tgcgggtctacttgcgagaaagtgcttggttgtggacggcacaggtgccctgagcggtgc
catcgtggtccttgtgatgagacttgccggcttgtgatcacaaagtcctgccgttgtggg
ggtctgaagaaggaggtgccgtgctaccaagaattgacgtgtgaaaggaaatgtcaacgc
ttgcgaaactgtggacgccatgcttgtaaacgacgttgctgtgctggcgattgtccaccc
tgctctgagacttgtgataggaagctcagatgtgggaaccataaatgcctttcaccatgc
cacagaggtgcttgttctccttgtcctctgatgaagactatttcttgcgcctgtgggaaa
acatgctttgaggttccttgtgggactgaaaaaaatcagaaaccacccaaatgctcaaag
aaatgcaatatacctcgcctttgcaggcacaagcttgaatgccggccccacaaatgccac
tatggagcctgcccaccttgcaagctgacctgtggagaagaactttcctgtggccacaca
tgtaaagaaaggtgtcatggccctatttctcctccaaaccccgagttcacactaaaacca
acaaaaaagaaaatggaaaagcaaatagaatgtacacctggaacactgtgcccaccatgc
aaagaggtggttttagggccatgttttggtcagcatcttggccaagaacgagctatgcct
tgttccaaatggaggccgtttccctgtcaaaatttatgtgggaatcctcttctttgtggc
aaccattattgtacaaaatcttgccatgtgttagaggtcccattgaatcagcctgaagga
gatccaatagcatctgtcagtaaagagaacgcacttgctgagccttgtgaacaatgcgat
cttccttgtcaaagggttagggagcctccttgttcacatcgttgccctttgccatgccat
ctgagcgactgtccaccttgcaaagtccttgttaaaaaaccatgctattgtggtgctatg
gtacatgctttcgagtgtgtgtattttaacaacttaaaagctaaagaacagcttaaagta
aggtcatgtggtggcccatgtcataggaagctaccgaattgtccccatctgtgctcagaa
gtatgtcaccctggtatgtgcccatcggttgatcagtgcatgaaaaaggtcaatgtacgt
tgtgcatgcaacatgctgaaacaagagtggatatgtcaagatgtccttaaggaataccgt
aattctggtcgtgatccaaaagaagtacctaaaagccagtttggagctggcttgattgcc
tgtggcgaagactgcaagaaaaaggtgaaggtgcccgatcctgagttgcatctccggaaa
agtcaggagaccaagaaccccgctgtggaagttgcaagtgtgcccaaacgcaggaagcga
cgggaccgcggacaagaggttaaagtatcaaaattccaggaagtcaaggcctatgtgatg
agggtgctactgattattttgctatctataatcatcgcagctggattgtacctcttgtgg
aagggtatattctggctttctgactggatgaatgaaatggaagagcagagggctagacaa
aggcatccgaggggtgcaacattgtag
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