Panicum virgatum (switchgrass): 120705939
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Entry
120705939 CDS
T07260
Name
(RefSeq) serine/arginine-rich splicing factor RS2Z33-like isoform X1
KO
K12896
serine/arginine-rich splicing factor 7
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120705939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120705939
Spliceosome [BR:
pvir03041
]
Common components
Common spliceosomal components
SR proteins
120705939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
zf-CCHC
zf-CCHC_5
RRM_3
RRM_5
zf-CCHC_3
RRM_occluded
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
120705939
NCBI-ProteinID:
XP_039846431
LinkDB
All DBs
Position
5K:6486504..6489855
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AA seq
290 aa
AA seq
DB search
MPRYDDRYGGNTRLYVGRISSRTRTEDLEDIFSRYGRVRYVDMKHEFAFVEFSDPQDADD
ARYNLDGRDIDGSRIIVEFAKGVPRGPGGSREYMGRGPPPGSGRCFNCGIDGHWARDCKA
GDWKNRCYRCGDRGHIERDCRNSPKNLRRGRSYSRSPSPRRGRGRDRSYSRSRSRSYSRS
RSPRRDTCDERRSMSPRDSRSPRRSPRDSRSPRRSPSPSKGRGRSPSRSPAPRERNGSDH
SMSPRRADSRSPADHERRDLSPVANGRSPSPRDSKENGNQHLSPRGSASP
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgccccgctacgatgatcggtatggtgggaacacaaggctgtacgtgggtcgtatctcc
tctcgtacaaggacagaggaccttgaagacattttcagcagatatgggagagtgcgttat
gtggatatgaagcatgagttcgcatttgttgagtttagcgatccccaggatgctgatgat
gcaaggtacaatcttgatggtcgggatattgatggaagccgcataattgtcgagtttgct
aaaggggttccgcgtggcccaggaggatcccgtgaatatatgggcaggggaccacctcca
ggttctggccgctgctttaactgtggtattgatgggcattgggctcgtgactgcaaagct
ggtgactggaaaaacaggtgctaccgctgcggagataggggccacatagaaagagactgt
cggaatagccctaagaatctcaggcgtggaagaagttactcaaggtccccatcccctcgt
cgtggaaggggccgtgataggagttacagcaggagccgcagtaggagctacagccgctcc
cgatctccaaggagggatacctgtgacgaaaggcgatcaatgagccctcgcgacagccgc
agcccaaggaggagccctcgcgacagccgcagcccaaggaggagcccttcaccatccaag
ggaaggggccgtagccccagcaggagtcctgcaccaagggaacgcaatggctcagatcac
agcatgagcccaaggagagctgacagccgtagcccagcagatcacgagcgccgtgacctc
agtccggtggccaatggtcgtagcccaagccccagggactccaaagaaaatggcaaccag
cacctttcccccagaggaagtgcatccccctga
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