Panicum virgatum (switchgrass): 120705946
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Entry
120705946 CDS
T07260
Name
(RefSeq) AMSH-like ubiquitin thioesterase 1
KO
K11866
STAM-binding protein [EC:
3.4.19.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
120705946
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120705946
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120705946
04121 Ubiquitin system [BR:
pvir04121
]
120705946
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120705946
Peptidases and inhibitors [BR:
pvir01002
]
Metallo peptidases
Family M67
120705946
Membrane trafficking [BR:
pvir04131
]
Endosome - Lysosome transport
Others
Others
120705946
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
120705946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP8_dimer
JAB
Prok-JAB
Motif
Other DBs
NCBI-GeneID:
120705946
NCBI-ProteinID:
XP_039846436
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All DBs
Position
5K:6541887..6546606
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AA seq
477 aa
AA seq
DB search
MGPSRQRGGAFDIEALAPAIAVDHNIRLPNYFRIADSLLTKANVYREEKNLIQLYVLLLR
YSRLVYETIPKHRDYRTFKSGEKDFFKKKLLDVIDELELLKPVVQQRIAELDVGDITEPH
YLNGTYAASCRIDKHSADSNAPQDVMRHQMASSPSVKPVRQICKQNIGRPYPKEDTLSRH
SILGPDGLSGQGVGSVVAMKVQYPTNNEITQSDVSSLLPTILNQDSLNCDNKALLYGSRT
DNEIRLSVPVEEELYQLSIQQPSYPPMLSQVHVDRPIFSSRVADSKPECDISDIDHYRRV
DVPEELTACFLKAAEANTIKTLETCGLIFGALLMDPEVGEHFKVTALIIPKQKSTSDTCE
ATCEEEIPEVIQSIGSPYQLGWIHTHPTQDCFMSSVDLHNHYSYQKELHEAFAIVLAPSK
RSKKDREKIFQLTDPGGMRAIGDCAKRSFHPHDLGTYKECSHIKLKSALAFRVIDLR
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggggccgtctcggcaacgcgggggagctttcgacatcgaggcattggcaccggccatc
gccgtcgatcacaacatcaggctccccaactacttccgcatcgccgacagcctcctcacc
aaggctaacgtatatagggaggagaagaacctcatccagctgtatgttcttctcctgaga
tactcgaggcttgtgtacgagactattccaaagcatcgcgactaccgcactttcaagtca
ggagaaaaggacttcttcaagaagaaattattggatgtcatcgatgagctagagttgctg
aagccagtcgtgcagcagaggattgcagagcttgatgtgggtgatattacagaacctcat
tatttaaatggaacctatgctgcgagttgcaggattgacaagcattcggcagactcaaat
gcaccacaggatgttatgagacatcaaatggcatcatcaccgagtgttaaacctgtcagg
cagatctgcaaacaaaacatcggtcgaccttatccaaaagaagatacgctatccaggcac
tccatattagggcctgatggactttctgggcagggagtaggatctgttgttgcaatgaag
gttcagtatccaactaataacgaaataacacaaagtgatgtgtctagtttactaccaact
atcttgaaccaagatagcttgaattgcgacaataaagcattgctatatggctccagaact
gacaatgaaatacggttgtctgtgccagtagaagaagaattgtaccaattgagtatccaa
cagccttcttacccaccaatgttgtcacaagtacatgtagatcgaccaatattttcctca
agagttgctgattcaaaaccagagtgtgatatctcagatattgaccattatcggcgtgtg
gatgttccagaggagttgacagcatgtttcctgaaggctgctgaggcaaataccataaaa
actctggaaacatgtgggcttatttttggtgcgctgctcatggacccagaggtaggcgag
cattttaaggtgacagccttgataattccaaaacagaaatcaacaagtgatacgtgcgaa
gctacatgtgaagaagaaataccggaagttattcagagcatcggctcaccttaccagctt
ggttggattcatacacatccaacacaggactgttttatgtcttctgttgatctccataat
cattattcgtatcagaaggagctacacgaagcatttgcgatagttctggcaccttcaaaa
cgaagcaaaaaagaccgtgagaaaatatttcagctcacggatccaggtggtatgcgtgca
attggtgattgcgctaagaggagtttccatccgcatgacttgggaacctacaaggaatgc
tcccacataaagttgaagtctgctttagcttttcgtgttattgaccttcgataa
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